On 10/25/15, 3:29 AM, "Jacobs H (NP)" <h.jac...@maastrichtuniversity.nl> wrote:
>Hi. > >Just one another related question: now that I was able to combine left and >right hippocampal subfields with the aparc-aseg correctly, I noticed that >the left and right hippocampal subfields have the same color labels and >codes. What would be the best way to make sure that FreeSurfer understand >that the left and right subfields (e.g. Left and right CA1) are different >areas? > >Thanks! >Heidi > >On 10/21/15, 11:01 PM, "Jacobs H (NP)" <h.jac...@maastrichtuniversity.nl> >wrote: > >>Thanks! Works wonderful! >>Heidi >> >>On 10/21/15, 10:50 PM, "Douglas N Greve" <gr...@nmr.mgh.harvard.edu> >>wrote: >> >>>If you want to remove them, you can use mri_binarize with the --replace >>>option, replacing them with whatever you want. >>> >>>On 10/21/2015 04:38 PM, Jacobs H (NP) wrote: >>>> Hi, >>>> >>>> I am trying to generate a segmentation file containing the aseg+aparc >>>> but replacing the hippocampus with the hippocampal subfields. >>>> With mergeseg I was able to merge the segmentations, but unfortunately >>>> parts of the ³old² hippocampus (labeled as 17 and 53) are still in >>>> there (as the area covered by the subfields is not 100% equal to the >>>> hippocampus of the aseg). >>>> How can I remove the remains of the old hippocampal labels? >>>> >>>> Many thanks! >>>> Best >>>> Heidi >>>> >>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>>-- >>>Douglas N. Greve, Ph.D. >>>MGH-NMR Center >>>gr...@nmr.mgh.harvard.edu >>>Phone Number: 617-724-2358 >>>Fax: 617-726-7422 >>> >>>Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>>FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >>>www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >>> >>>_______________________________________________ >>>Freesurfer mailing list >>>Freesurfer@nmr.mgh.harvard.edu >>>https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>>The information in this e-mail is intended only for the person to whom >>>it >>>is >>>addressed. If you believe this e-mail was sent to you in error and the >>>e-mail >>>contains patient information, please contact the Partners Compliance >>>HelpLine at >>>http://www.partners.org/complianceline . If the e-mail was sent to you >>>in >>>error >>>but does not contain patient information, please contact the sender and >>>properly >>>dispose of the e-mail. >>> >> > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
