Hi all, When trying to run recon-all longitudinal processing (*recon-all -base 060027 -tp 060027_S01 -all* ) on a single time point, we run into a problem at mri_robust_template, where it stops, doesn't really produce any specific error message but prints some help page of some kind. And then: "recon-all -s <subject1> exited with ERRORS at Wed Jul 22 18:05:55 " etc.
This is the last output from recon-all: mri_robust_template --mov /mnt/fs5/fs510/060027_S01/mri/norm.mgz --lta /mnt/fs5/fs510/060027/mri/transforms/060027_S01_to_060027.lta --template /mnt/fs5/fs510/060027/mri/norm_template.mgz --average 1 --sat 4.685 We have already run the cross-sectional processing on this subject, so all of those files are there. norm.mgz exists, but none the files mentioned after --lta and --template do not exist. But at least norm_template.mgz is the output of mri_robust_template, right? I'm unsure if 060027_S01_to_060027.lta is supposed to be there before mri_robust_template starts? Is that the problem or is it something else? Any help would be appreciated, Thank you! yours, Lars M. Rimol, PhD Norwegian University of Science and Technology (NTNU) Trondheim, Norway
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