Hi Thomas, this looks like a really nice script and a lot better than my own. In the upcoming release of FreeSurfer v.6 my work-around probably is not needed anymore. However, I haven’t been able to have a look at the dev release yet and whether the standard recon-all features a flag to process high resolution data.
Best, Falk P.S. Following your instructions one will definitely become a coffee junkie. :D Von: freesurfer-boun...@nmr.mgh.harvard.edu [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] Im Auftrag von Emmerling Thomas (PSYCHOLOGY) Gesendet: Mittwoch, 24. Juni 2015 14:35 An: freesurfer@nmr.mgh.harvard.edu Betreff: [Freesurfer] recon-all pipeline for (sub-millimeter) 7T data Hello! I wrote a bash script some time ago to process data acquired at a sub-millimeter resolution following the nice wiki entry of Falk Lüsebrink (https://surfer.nmr.mgh.harvard.edu/fswiki/HiResRecon). I thought it might be helpful for others, too, as there are some questions about it in the mailing list archives, so here it is: https://github.com/thomastweets/freesurfer-7t-pipeline. I am happy about any comments! Best, Thomas
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