Hello Douglas and ZK, I set the path for shared library in my .basrch file, but it still does not work and comes up with this Error: *3dvolreg.afni: error while loading shared libraries: libXp.so.6: wrong ELF class: ELFCLASS32* *ERROR: 3dvolreg.afni* *Invalid null command.*
Trinh 2015-06-23 3:03 GMT+07:00 Z K <zkauf...@nmr.mgh.harvard.edu>: > Trinh, > > Attempt to determine where libXp.so.6 was installed on your system after > you installed it using yum. For example, on my system libXp.so.6 exists > in directory "/usr/lib64". Once you determine the location where the > library resides, add that directory to your LD_LIBRARY_PATH after you > source freesurfer. > > $> source $FREESURFER_HOME/SetUpFreeSurfer.sh > $> export LD_LIBRARY_PATH=/usr/lib64:$LD_LIBRARY_PATH > $> preproc-sess -s sess01 -fsd bold -stc up -surface fsaverage lhrh > -fwhm 5 -per-run > > -Zeke > > > > > On 06/22/2015 02:40 PM, Douglas Greve wrote: > > I'm not sure what to tell you. Zeke, do you have any ideas? > > Alternatively, you can just install afni on your machine. Once you > > verify that the installation works, copy 3dvolreg from the installation. > > > > On 6/21/15 3:55 PM, Thục Trinh wrote: > >> Hello Douglas, > >> I already had *3dvolreg.afni* in */freesurfer/bin/*, but I still > >> download the new one 3dvolreg.afni and replaced it in /freesurfer/bin. > >> But the Error still remain the same. > >> *3dvolreg.afni: error while loading shared libraries: libXp.so.6: > >> cannot open shared object file: No such file or directory* > >> *ERROR: 3dvolreg.afni* > >> *Invalid null command.* > >> > >> > >> 2015-06-19 16:04 GMT+07:00 Douglas Greve <gr...@nmr.mgh.harvard.edu > >> <mailto:gr...@nmr.mgh.harvard.edu>>: > >> > >> > >> See this thread > >> > http://www.mail-archive.com/freesurfer%40nmr.mgh.harvard.edu/msg37764.html > >> > >> > >> > >> > >> On 6/17/15 5:59 PM, Thục Trinh wrote: > >>> Hi freesurfer experts, > >>> I am practicing on the fsfast tutorial data that were given at > >>> Freesurfer website. > >>> I run the command to do the pre-processing on the sess01 > <*noproc*>. > >>> *preproc-sess -s sess01 -fsd bold -stc up -surface fsaverage lhrh > >>> -fwhm 5 -per-run* > >>> it was unfinished and failed with the ERROR: > >>> *3dvolreg.afni: error while loading shared libraries: libXp.so.6: > >>> cannot open shared object file: No such file or directory* > >>> *ERROR: 3dvolreg.afni* > >>> *Invalid null command.* > >>> so I run the command to install libXp.so.6 under root permission > >>> *yum install libXp.so.6 *and completely installed. > >>> I found the file *3dvolreg.afni *in the $FREESURFER_HOME/bin > >>> But the ERROR still remained unfixed. > >>> > >>> Please help me with any suggestions to finish the preproc-sesss > >>> Thankyou and have a nice day. > >>> Trinh Tran > >>> > >>> > >>> _______________________________________________ > >>> Freesurfer mailing list > >>> Freesurfer@nmr.mgh.harvard.edu <mailto: > Freesurfer@nmr.mgh.harvard.edu> > >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >> > >> > >> _______________________________________________ > >> Freesurfer mailing list > >> Freesurfer@nmr.mgh.harvard.edu <mailto: > Freesurfer@nmr.mgh.harvard.edu> > >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >> > >> > >> The information in this e-mail is intended only for the person to > >> whom it is > >> addressed. If you believe this e-mail was sent to you in error and > >> the e-mail > >> contains patient information, please contact the Partners > >> Compliance HelpLine at > >> http://www.partners.org/complianceline . If the e-mail was sent to > >> you in error > >> but does not contain patient information, please contact the > >> sender and properly > >> dispose of the e-mail. > >> > >> > >> > >> > >> _______________________________________________ > >> Freesurfer mailing list > >> Freesurfer@nmr.mgh.harvard.edu > >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >
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