It looks like different runs have different number of slices. Is that right?
On 3/9/15 1:13 PM, Eryilmaz, H. Hamdi wrote:
Dear FS experts,
I got an error while running selxavg3-sess for a single subject. The
log (attached) says the following:
*************************************************************
** Input 018/tmp.mc-afni2.7515/invol.nii.gz and base
018/tmp.mc-afni2.7515/tempvol.nii.gz don't have same dimensions!
Input: nx=64 ny=64 nz=35
Base: nx=64 ny=64 nz=37
** FATAL ERROR: perhaps you could make your datasets match?
ERROR: 3dvolreg
*************************************************************
I am wondering which 'template.nii' file the script reads to create
tempvol.nii.gz. We have different functional runs (with different TRs)
under the subject's bold directory and for the run '/018' the TR
should be 1900 ms. It looks like the script is reading from a
'template.nii' located elsewhere for which the TR is 2000 ms.
*************************************************************
reading from template.nii...
TR=2000.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-0.998769, -0.00721698, 0.0490727)
j_ras = (-1.73634e-08, -0.989358, -0.145502)
k_ras = (0.0496006, -0.145323, 0.98814)
changing data type from short to float (noscale = 0)...
writing to 018/tmp.mc-afni2.7515/tempvol.nii.gz...
*************************************************************
Many thanks for your help!
Hamdi
--
Hamdi Eryilmaz, PhD
Massachusetts General Hospital
A.A. Martinos Center for Biomedical Imaging
Psychiatric Neuroimaging Division
149 13th St, Charlestown, MA 02129
Phone: +1 617 643 7462
Email:hamdi.eryil...@mgh.harvard.edu <mailto:heryil...@partners.org>
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