Wed Feb  4 11:53:21 KST 2015

/media/sf_F_DRIVE/ADHD200/Classification/Processed/TDC-51

/home/naveed-centos/freesurfer/bin/recon-all

-i
/media/sf_F_DRIVE/ADHD200/Classification/Original_selected/TDC/7407032/Pekin
g_7407032/Peking_7407032_1/scans/anat_1-anat/resources/NIfTI/files/rest.nii
-subject TDC-51 -all -qcache -openmp 2

subjid TDC-51

setenv SUBJECTS_DIR /media/sf_F_DRIVE/ADHD200/Classification/Processed

FREESURFER_HOME /home/naveed-centos/freesurfer

Actual FREESURFER_HOME /home/naveed-centos/freesurfer

build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0

Linux localhost.localdomain 2.6.32-431.5.1.el6.x86_64 #1 SMP Wed Feb 12
00:41:43 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux

cputime      unlimited

filesize     unlimited

datasize     unlimited

stacksize    10240 kbytes

coredumpsize 0 kbytes

memoryuse    unlimited

vmemoryuse   unlimited

descriptors  1024 

memorylocked 64 kbytes

maxproc      1024 

 

             total       used       free     shared    buffers     cached

Mem:      45011276    1158876   43852400          0      89928     358196

-/+ buffers/cache:     710752   44300524

Swap:     12009464          0   12009464

 

########################################

program versions used

$Id: recon-all,v 1.379.2.73 2013/05/12 23:15:37 nicks Exp $

$Id: mri_motion_correct.fsl,v 1.14 2011/03/02 20:16:39 nicks Exp $

mri_convert -all-info 

ProgramName: mri_convert  ProgramArguments: -all-info  ProgramVersion:
$Name: stable5 $  TimeStamp: 2015/02/04-02:53:21-GMT  BuildTimeStamp: May 13
2013 16:24:28  CVS: $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16
mreuter Exp $  User: naveed-centos  Machine: localhost.localdomain
Platform: Linux  PlatformVersion: 2.6.32-431.5.1.el6.x86_64  CompilerName:
GCC  CompilerVersion: 40400 

FLIRT version 5.5

$Id: talairach_avi,v 1.9 2011/03/02 18:38:06 nicks Exp $

mri_convert --version 

stable5

ProgramName: tkregister2_cmdl  ProgramArguments: --all-info  ProgramVersion:
$Name: stable5 $  TimeStamp: 2015/02/04-02:53:21-GMT  BuildTimeStamp: May 13
2013 16:24:28  CVS: $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve
Exp $  User: naveed-centos  Machine: localhost.localdomain  Platform: Linux
PlatformVersion: 2.6.32-431.5.1.el6.x86_64  CompilerName: GCC
CompilerVersion: 40400 

Program nu_correct, built from:

Package MNI N3, version 1.10, compiled by nicks@minerva
(x86_64-unknown-linux-gnu) on 2010-02-20 at 17:32:37

ProgramName: mri_make_uchar  ProgramArguments: -all-info  ProgramVersion:
$Name: stable5 $  TimeStamp: 2015/02/04-02:53:21-GMT  BuildTimeStamp: May 13
2013 16:24:28  CVS: $Id: mri_make_uchar.c,v 1.4 2011/03/02 00:04:14 nicks
Exp $  User: naveed-centos  Machine: localhost.localdomain  Platform: Linux
PlatformVersion: 2.6.32-431.5.1.el6.x86_64  CompilerName: GCC
CompilerVersion: 40400 

ProgramName: mri_normalize  ProgramArguments: -all-info  ProgramVersion:
$Name: stable5 $  TimeStamp: 2015/02/04-02:53:21-GMT  BuildTimeStamp: May 13
2013 16:24:28  CVS: $Id: mri_normalize.c,v 1.73.2.1 2012/10/17 19:11:32
nicks Exp $  User: naveed-centos  Machine: localhost.localdomain  Platform:
Linux  PlatformVersion: 2.6.32-431.5.1.el6.x86_64  CompilerName: GCC
CompilerVersion: 40400 

ProgramName: mri_watershed  ProgramArguments: -all-info  ProgramVersion:
$Name: stable5 $  TimeStamp: 2015/02/04-02:53:21-GMT  BuildTimeStamp: May 13
2013 16:24:28  CVS: $Id: mri_watershed.cpp,v 1.96.2.1 2011/11/08 22:18:44
nicks Exp $  User: naveed-centos  Machine: localhost.localdomain  Platform:
Linux  PlatformVersion: 2.6.32-431.5.1.el6.x86_64  CompilerName: GCC
CompilerVersion: 40400 

ProgramName: mri_gcut  ProgramArguments: -all-info  ProgramVersion: $Name:
stable5 $  TimeStamp: 2015/02/04-02:53:21-GMT  BuildTimeStamp: May 13 2013
16:24:28  CVS: $Id: mri_gcut.cpp,v 1.14 2011/03/02 00:04:16 nicks Exp $
User: naveed-centos  Machine: localhost.localdomain  Platform: Linux
PlatformVersion: 2.6.32-431.5.1.el6.x86_64  CompilerName: GCC
CompilerVersion: 40400 

ProgramName: mri_segment  ProgramArguments: -all-info  ProgramVersion:
$Name: stable5 $  TimeStamp: 2015/02/04-02:53:21-GMT  BuildTimeStamp: May 13
2013 16:24:28  CVS: $Id: mri_segment.c,v 1.40 2011/03/02 00:04:24 nicks Exp
$  User: naveed-centos  Machine: localhost.localdomain  Platform: Linux
PlatformVersion: 2.6.32-431.5.1.el6.x86_64  CompilerName: GCC
CompilerVersion: 40400 

ProgramName: mri_label2label  ProgramArguments: -all-info  ProgramVersion:
$Name: stable5 $  TimeStamp: 2015/02/04-02:53:21-GMT  BuildTimeStamp: May 13
2013 16:24:28  CVS: $Id: mri_label2label.c,v 1.40.2.2 2013/04/02 16:26:15
greve Exp $  User: naveed-centos  Machine: localhost.localdomain  Platform:
Linux  PlatformVersion: 2.6.32-431.5.1.el6.x86_64  CompilerName: GCC
CompilerVersion: 40400 

 

 

======= NUMBER OF OPENMP THREADS = 2 ======= 

ProgramName: mri_em_register  ProgramArguments: -all-info  ProgramVersion:
$Name: stable5 $  TimeStamp: 2015/02/04-02:53:21-GMT  BuildTimeStamp: May 13
2013 16:24:28  CVS: $Id: mri_em_register.c,v 1.84.2.3 2013/02/09 00:49:26
nicks Exp $  User: naveed-centos  Machine: localhost.localdomain  Platform:
Linux  PlatformVersion: 2.6.32-431.5.1.el6.x86_64  CompilerName: GCC
CompilerVersion: 40400 

ProgramName: mri_ca_normalize  ProgramArguments: -all-info  ProgramVersion:
$Name: stable5 $  TimeStamp: 2015/02/04-02:53:21-GMT  BuildTimeStamp: May 13
2013 16:24:28  CVS: $Id: mri_ca_normalize.c,v 1.52.2.2 2012/10/17 19:11:32
nicks Exp $  User: naveed-centos  Machine: localhost.localdomain  Platform:
Linux  PlatformVersion: 2.6.32-431.5.1.el6.x86_64  CompilerName: GCC
CompilerVersion: 40400 

ProgramName: mri_ca_register  ProgramArguments: -all-info  ProgramVersion:
$Name: stable5 $  TimeStamp: 2015/02/04-02:53:21-GMT  BuildTimeStamp: May 13
2013 16:24:28  CVS: $Id: mri_ca_register.c,v 1.78.2.3 2013/02/09 00:42:20
nicks Exp $  User: naveed-centos  Machine: localhost.localdomain  Platform:
Linux  PlatformVersion: 2.6.32-431.5.1.el6.x86_64  CompilerName: GCC
CompilerVersion: 40400 

ProgramName: mri_ca_label  ProgramArguments: -all-info  ProgramVersion:
$Name: stable5 $  TimeStamp: 2015/02/04-02:53:22-GMT  BuildTimeStamp: May 13
2013 16:24:28  CVS: $Id: mri_ca_label.c,v 1.96.2.1 2012/08/28 22:11:20 nicks
Exp $  User: naveed-centos  Machine: localhost.localdomain  Platform: Linux
PlatformVersion: 2.6.32-431.5.1.el6.x86_64  CompilerName: GCC
CompilerVersion: 40400 

ProgramName: mri_pretess  ProgramArguments: -all-info  ProgramVersion:
$Name: stable5 $  TimeStamp: 2015/02/04-02:53:22-GMT  BuildTimeStamp: May 13
2013 16:24:28  CVS: $Id: mri_pretess.c,v 1.20 2011/03/02 00:04:23 nicks Exp
$  User: naveed-centos  Machine: localhost.localdomain  Platform: Linux
PlatformVersion: 2.6.32-431.5.1.el6.x86_64  CompilerName: GCC
CompilerVersion: 40400 

ProgramName: mri_fill  ProgramArguments: -all-info  ProgramVersion: $Name:
stable5 $  TimeStamp: 2015/02/04-02:53:22-GMT  BuildTimeStamp: May 13 2013
16:24:28  CVS: $Id: mri_fill.c,v 1.118 2011/03/16 21:23:49 nicks Exp $
User: naveed-centos  Machine: localhost.localdomain  Platform: Linux
PlatformVersion: 2.6.32-431.5.1.el6.x86_64  CompilerName: GCC
CompilerVersion: 40400 

ProgramName: mri_tessellate  ProgramArguments: -all-info  ProgramVersion:
$Name: stable5 $  TimeStamp: 2015/02/04-02:53:22-GMT  BuildTimeStamp: May 13
2013 16:24:28  CVS: $Id: mri_tessellate.c,v 1.36 2011/03/02 00:04:25 nicks
Exp $  User: naveed-centos  Machine: localhost.localdomain  Platform: Linux
PlatformVersion: 2.6.32-431.5.1.el6.x86_64  CompilerName: GCC
CompilerVersion: 40400 

ProgramName: mri_concatenate_lta  ProgramArguments: -all-info
ProgramVersion: $Name: stable5 $  TimeStamp: 2015/02/04-02:53:22-GMT
BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: mri_concatenate_lta.c,v 1.10
2011/03/16 21:23:48 nicks Exp $  User: naveed-centos  Machine:
localhost.localdomain  Platform: Linux  PlatformVersion:
2.6.32-431.5.1.el6.x86_64  CompilerName: GCC  CompilerVersion: 40400 

ProgramName: mri_normalize_tp2  ProgramArguments: -all-info  ProgramVersion:
$Name: stable5 $  TimeStamp: 2015/02/04-02:53:22-GMT  BuildTimeStamp: May 13
2013 16:24:28  CVS: $Id: mri_normalize_tp2.c,v 1.8 2011/03/02 00:04:23 nicks
Exp $  User: naveed-centos  Machine: localhost.localdomain  Platform: Linux
PlatformVersion: 2.6.32-431.5.1.el6.x86_64  CompilerName: GCC
CompilerVersion: 40400 

ProgramName: mris_smooth  ProgramArguments: -all-info  ProgramVersion:
$Name: stable5 $  TimeStamp: 2015/02/04-02:53:22-GMT  BuildTimeStamp: May 13
2013 16:24:28  CVS: $Id: mris_smooth.c,v 1.28 2011/03/02 00:04:34 nicks Exp
$  User: naveed-centos  Machine: localhost.localdomain  Platform: Linux
PlatformVersion: 2.6.32-431.5.1.el6.x86_64  CompilerName: GCC
CompilerVersion: 40400 

ProgramName: mris_inflate  ProgramArguments: -all-info  ProgramVersion:
$Name: stable5 $  TimeStamp: 2015/02/04-02:53:22-GMT  BuildTimeStamp: May 13
2013 16:24:28  CVS: $Id: mris_inflate.c,v 1.43 2011/03/02 00:04:32 nicks Exp
$  User: naveed-centos  Machine: localhost.localdomain  Platform: Linux
PlatformVersion: 2.6.32-431.5.1.el6.x86_64  CompilerName: GCC
CompilerVersion: 40400 

ProgramName: mris_curvature  ProgramArguments: -all-info  ProgramVersion:
$Name: stable5 $  TimeStamp: 2015/02/04-02:53:22-GMT  BuildTimeStamp: May 13
2013 16:24:28  CVS: $Id: mris_curvature.c,v 1.31 2011/03/02 00:04:30 nicks
Exp $  User: naveed-centos  Machine: localhost.localdomain  Platform: Linux
PlatformVersion: 2.6.32-431.5.1.el6.x86_64  CompilerName: GCC
CompilerVersion: 40400 

ProgramName: mris_sphere  ProgramArguments: -all-info  ProgramVersion:
$Name: stable5 $  TimeStamp: 2015/02/04-02:53:22-GMT  BuildTimeStamp: May 13
2013 16:24:28  CVS: $Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp
$  User: naveed-centos  Machine: localhost.localdomain  Platform: Linux
PlatformVersion: 2.6.32-431.5.1.el6.x86_64  CompilerName: GCC
CompilerVersion: 40400 

ProgramName: mris_fix_topology  ProgramArguments: -all-info  ProgramVersion:
$Name: stable5 $  TimeStamp: 2015/02/04-02:53:22-GMT  BuildTimeStamp: May 13
2013 16:24:28  CVS: $Id: mris_fix_topology.c,v 1.48 2011/03/02 00:04:32
nicks Exp $  User: naveed-centos  Machine: localhost.localdomain  Platform:
Linux  PlatformVersion: 2.6.32-431.5.1.el6.x86_64  CompilerName: GCC
CompilerVersion: 40400 

ProgramName: mris_topo_fixer  ProgramArguments: -all-info  ProgramVersion:
$Name: stable5 $  TimeStamp: 2015/02/04-02:53:22-GMT  BuildTimeStamp: May 13
2013 16:24:28  CVS: $Id: mris_topo_fixer.cpp,v 1.29 2011/03/02 00:04:34
nicks Exp $  User: naveed-centos  Machine: localhost.localdomain  Platform:
Linux  PlatformVersion: 2.6.32-431.5.1.el6.x86_64  CompilerName: GCC
CompilerVersion: 40400 

ProgramName: mris_ca_label  ProgramArguments: -all-info  ProgramVersion:
$Name: stable5 $  TimeStamp: 2015/02/04-02:53:22-GMT  BuildTimeStamp: May 13
2013 16:24:28  CVS: $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks
Exp $  User: naveed-centos  Machine: localhost.localdomain  Platform: Linux
PlatformVersion: 2.6.32-431.5.1.el6.x86_64  CompilerName: GCC
CompilerVersion: 40400 

ProgramName: mris_euler_number  ProgramArguments: -all-info  ProgramVersion:
$Name: stable5 $  TimeStamp: 2015/02/04-02:53:22-GMT  BuildTimeStamp: May 13
2013 16:24:28  CVS: $Id: mris_euler_number.c,v 1.8.2.2 2013/01/14 22:40:07
greve Exp $  User: naveed-centos  Machine: localhost.localdomain  Platform:
Linux  PlatformVersion: 2.6.32-431.5.1.el6.x86_64  CompilerName: GCC
CompilerVersion: 40400 

ProgramName: mris_make_surfaces  ProgramArguments: -all-info
ProgramVersion: $Name: stable5 $  TimeStamp: 2015/02/04-02:53:22-GMT
BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: mris_make_surfaces.c,v
1.127.2.6 2013/05/12 22:28:01 nicks Exp $  User: naveed-centos  Machine:
localhost.localdomain  Platform: Linux  PlatformVersion:
2.6.32-431.5.1.el6.x86_64  CompilerName: GCC  CompilerVersion: 40400 

ProgramName: mris_register  ProgramArguments: -all-info  ProgramVersion:
$Name: stable5 $  TimeStamp: 2015/02/04-02:53:22-GMT  BuildTimeStamp: May 13
2013 16:24:28  CVS: $Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks
Exp $  User: naveed-centos  Machine: localhost.localdomain  Platform: Linux
PlatformVersion: 2.6.32-431.5.1.el6.x86_64  CompilerName: GCC
CompilerVersion: 40400 

ProgramName: mris_volmask  ProgramArguments: --all-info  ProgramVersion:
$Name: stable5 $  TimeStamp: 2015/02/04-02:53:22-GMT  BuildTimeStamp: May 13
2013 16:24:28  CVS: $Id: mris_volmask.cpp,v 1.25 2011/03/02 00:04:34 nicks
Exp $  User: naveed-centos  Machine: localhost.localdomain  Platform: Linux
PlatformVersion: 2.6.32-431.5.1.el6.x86_64  CompilerName: GCC
CompilerVersion: 40400 

ProgramName: mris_anatomical_stats  ProgramArguments: -all-info
ProgramVersion: $Name: stable5 $  TimeStamp: 2015/02/04-02:53:22-GMT
BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: mris_anatomical_stats.c,v
1.72 2011/03/02 00:04:26 nicks Exp $  User: naveed-centos  Machine:
localhost.localdomain  Platform: Linux  PlatformVersion:
2.6.32-431.5.1.el6.x86_64  CompilerName: GCC  CompilerVersion: 40400 

ProgramName: mrisp_paint  ProgramArguments: -all-info  ProgramVersion:
$Name: stable5 $  TimeStamp: 2015/02/04-02:53:22-GMT  BuildTimeStamp: May 13
2013 16:24:28  CVS: $Id: mrisp_paint.c,v 1.11 2011/03/02 00:04:35 nicks Exp
$  User: naveed-centos  Machine: localhost.localdomain  Platform: Linux
PlatformVersion: 2.6.32-431.5.1.el6.x86_64  CompilerName: GCC
CompilerVersion: 40400 

ProgramName: mris_curvature_stats  ProgramArguments: -all-info
ProgramVersion: $Name: stable5 $  TimeStamp: 2015/02/04-02:53:23-GMT
BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: mris_curvature_stats.c,v
1.64 2011/03/02 00:04:30 nicks Exp $  User: naveed-centos  Machine:
localhost.localdomain  Platform: Linux  PlatformVersion:
2.6.32-431.5.1.el6.x86_64  CompilerName: GCC  CompilerVersion: 40400 

ProgramName: mris_calc  ProgramArguments: -all-info  ProgramVersion: $Name:
stable5 $  TimeStamp: 2015/02/04-02:53:23-GMT  BuildTimeStamp: May 13 2013
16:24:28  CVS: $Id: mris_calc.c,v 1.37.2.8 2013/01/28 17:05:17 greve Exp $
User: naveed-centos  Machine: localhost.localdomain  Platform: Linux
PlatformVersion: 2.6.32-431.5.1.el6.x86_64  CompilerName: GCC
CompilerVersion: 40400 

$Id: mri_robust_register.cpp,v 1.52.2.3 2012/11/20 17:26:47 mreuter Exp $

 

ProgramName: mri_robust_register  ProgramArguments: -all-info
ProgramVersion: $Name: stable5 $  TimeStamp: 2015/02/04-02:53:23-GMT
BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: mri_robust_register.cpp,v
1.52.2.3 2012/11/20 17:26:47 mreuter Exp $  User: naveed-centos  Machine:
localhost.localdomain  Platform: Linux  PlatformVersion:
2.6.32-431.5.1.el6.x86_64  CompilerName: GCC  CompilerVersion: 40400 

$Id: mri_robust_template.cpp,v 1.37.2.2 2012/10/10 19:59:06 mreuter Exp $

 

ProgramName: mri_robust_template  ProgramArguments: -all-info
ProgramVersion: $Name: stable5 $  TimeStamp: 2015/02/04-02:53:23-GMT
BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: mri_robust_template.cpp,v
1.37.2.2 2012/10/10 19:59:06 mreuter Exp $  User: naveed-centos  Machine:
localhost.localdomain  Platform: Linux  PlatformVersion:
2.6.32-431.5.1.el6.x86_64  CompilerName: GCC  CompilerVersion: 40400 

ProgramName: mri_and  ProgramArguments: -all-info  ProgramVersion: $Name:
stable5 $  TimeStamp: 2015/02/04-02:53:23-GMT  BuildTimeStamp: May 13 2013
16:24:28  CVS: $Id: mri_and.c,v 1.4 2011/03/02 00:04:13 nicks Exp $  User:
naveed-centos  Machine: localhost.localdomain  Platform: Linux
PlatformVersion: 2.6.32-431.5.1.el6.x86_64  CompilerName: GCC
CompilerVersion: 40400 

ProgramName: mri_or  ProgramArguments: -all-info  ProgramVersion: $Name:
stable5 $  TimeStamp: 2015/02/04-02:53:23-GMT  BuildTimeStamp: May 13 2013
16:24:28  CVS: $Id: mri_or.c,v 1.3 2011/03/02 00:04:13 nicks Exp $  User:
naveed-centos  Machine: localhost.localdomain  Platform: Linux
PlatformVersion: 2.6.32-431.5.1.el6.x86_64  CompilerName: GCC
CompilerVersion: 40400 

ProgramName: mri_fuse_segmentations  ProgramArguments: -all-info
ProgramVersion: $Name: stable5 $  TimeStamp: 2015/02/04-02:53:23-GMT
BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: mri_fuse_segmentations.c,v
1.8 2011/03/02 00:04:15 nicks Exp $  User: naveed-centos  Machine:
localhost.localdomain  Platform: Linux  PlatformVersion:
2.6.32-431.5.1.el6.x86_64  CompilerName: GCC  CompilerVersion: 40400 

ProgramName: mri_segstats  ProgramArguments: -all-info  ProgramVersion:
$Name: stable5 $  TimeStamp: 2015/02/04-02:53:23-GMT  BuildTimeStamp: May 13
2013 16:24:28  CVS: $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve
Exp $  User: naveed-centos  Machine: localhost.localdomain  Platform: Linux
PlatformVersion: 2.6.32-431.5.1.el6.x86_64  CompilerName: GCC
CompilerVersion: 40400 

#######################################

GCADIR /home/naveed-centos/freesurfer/average

GCA RB_all_2008-03-26.gca

GCASkull RB_all_withskull_2008-03-26.gca

AvgCurvTif average.curvature.filled.buckner40.tif

GCSDIR /home/naveed-centos/freesurfer/average

GCS curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs

#######################################

/media/sf_F_DRIVE/ADHD200/Classification/Processed/TDC-51

 

mri_convert
/media/sf_F_DRIVE/ADHD200/Classification/Original_selected/TDC/7407032/Pekin
g_7407032/Peking_7407032_1/scans/anat_1-anat/resources/NIfTI/files/rest.nii
/media/sf_F_DRIVE/ADHD200/Classification/Processed/TDC-51/mri/orig/001.mgz 

 

mri_convert
/media/sf_F_DRIVE/ADHD200/Classification/Original_selected/TDC/7407032/Pekin
g_7407032/Peking_7407032_1/scans/anat_1-anat/resources/NIfTI/files/rest.nii
/media/sf_F_DRIVE/ADHD200/Classification/Processed/TDC-51/mri/orig/001.mgz 

$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $

reading from
/media/sf_F_DRIVE/ADHD200/Classification/Original_selected/TDC/7407032/Pekin
g_7407032/Peking_7407032_1/scans/anat_1-anat/resources/NIfTI/files/rest.nii.
..

TR=0.00, TE=0.00, TI=0.00, flip angle=0.00

i_ras = (-1, -0, 0)

j_ras = (-0, 1, 0)

k_ras = (-0, -0, 1)

writing to
/media/sf_F_DRIVE/ADHD200/Classification/Processed/TDC-51/mri/orig/001.mgz..
.

#--------------------------------------------

#@# MotionCor Wed Feb  4 11:53:29 KST 2015

Found 1 runs

/media/sf_F_DRIVE/ADHD200/Classification/Processed/TDC-51/mri/orig/001.mgz

Checking for (invalid) multi-frame inputs...

WARNING: only one run found. This is OK, but motion

correction cannot be performed on one run, so I'll

copy the run to rawavg and continue.

 

cp
/media/sf_F_DRIVE/ADHD200/Classification/Processed/TDC-51/mri/orig/001.mgz
/media/sf_F_DRIVE/ADHD200/Classification/Processed/TDC-51/mri/rawavg.mgz 

 

/media/sf_F_DRIVE/ADHD200/Classification/Processed/TDC-51

 

mri_convert
/media/sf_F_DRIVE/ADHD200/Classification/Processed/TDC-51/mri/rawavg.mgz
/media/sf_F_DRIVE/ADHD200/Classification/Processed/TDC-51/mri/orig.mgz
--conform 

 

mri_convert
/media/sf_F_DRIVE/ADHD200/Classification/Processed/TDC-51/mri/rawavg.mgz
/media/sf_F_DRIVE/ADHD200/Classification/Processed/TDC-51/mri/orig.mgz
--conform 

$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $

reading from
/media/sf_F_DRIVE/ADHD200/Classification/Processed/TDC-51/mri/rawavg.mgz...

TR=0.00, TE=0.00, TI=0.00, flip angle=0.00

i_ras = (-1, -0, 0)

j_ras = (-0, 1, 0)

k_ras = (-0, -0, 1)

Original Data has (1, 1, 1) mm size and (176, 208, 256) voxels.

Data is conformed to 1 mm size and 256 voxels for all directions

changing data type from float to uchar (noscale = 0)...

MRIchangeType: Building histogram 

Reslicing using trilinear interpolation 

writing to
/media/sf_F_DRIVE/ADHD200/Classification/Processed/TDC-51/mri/orig.mgz...

 

mri_add_xform_to_header -c
/media/sf_F_DRIVE/ADHD200/Classification/Processed/TDC-51/mri/transforms/tal
airach.xfm
/media/sf_F_DRIVE/ADHD200/Classification/Processed/TDC-51/mri/orig.mgz
/media/sf_F_DRIVE/ADHD200/Classification/Processed/TDC-51/mri/orig.mgz 

 

INFO: extension is mgz

#--------------------------------------------

#@# Talairach Wed Feb  4 11:53:39 KST 2015

/media/sf_F_DRIVE/ADHD200/Classification/Processed/TDC-51/mri

 

mri_nu_correct.mni --n 1 --proto-iters 1000 --distance 50 --no-rescale --i
orig.mgz --o orig_nu.mgz 

 

Linux localhost.localdomain 2.6.32-431.5.1.el6.x86_64 #1 SMP Wed Feb 12
00:41:43 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux

 

recon-all -s TDC-51 exited with ERRORS at Wed Feb  4 11:53:45 KST 2015

 

To report a problem, see
http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting

 

Best Regards,
Muhammad Naveed Iqbal Qureshi

P please don't print this e-mail unless you really need to  

 

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