The problem is probably the --erode 1. Cortex is very thin, so eroding
by even one voxel may eliminate the entire ROI. Also, I'm not sure what
the commas in the segmentation numbers will do
On 8/17/14 9:11 AM, wang kangcheng wrote:
Dear experts
I want to create a mask for prefrontal gyrus. I used labels (
1001, 1003, 1012,1014,1018 etc,)in FreeSurferColorLUT.txt and run the
command like following
mri_binarize --i con_sub01/mri/aparc.a2009s+aseg.mgz --out
segment.nii.gz --match 1001, 1003, 1012,1014,1018 ----erode 1
But it found 0 voxels in final mask. How should I do ?
Thank you
------------------------------------------------------------------------
Wang Kangcheng
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
