Hi Rito. It is not finding information about the gradient table that was used for the acquisition. If you have that information you can use the below option to manually include it
--b bvals bvecs If you do not you could try using load_dicom in order to grab that information. Lilla On Mon, 11 Aug 2014, Ritobrato Datta wrote: > Hi All, > > I ran dt_recon and got the following error. Can someone suggest how to fix > this ? I have attached the dwi-infodump.dat file for more information. > > Thanks a lot for the help. > > Best > > Rito > > #@#------------------------------- > Fitting Tensors > Mon Aug 11 07:29:29 EDT 2014 > cd /Users/iron/rito/VisualMeasures-CHOP/VisionMeasures-003 > mri_glmfit --y > /Applications/freesurfer5.1/subjects/VisionMeasures-003/dtrecon/dwi-ec.nii > --glmdir /Applications/freesurfer5.1/subjects/VisionMeasures-003/dtrecon > --dti > /Applications/freesurfer5.1/subjects/VisionMeasures-003/dtrecon/dwi-infodump.dat > > $Id: mri_glmfit.c,v 1.196.2.6 2011/05/05 20:54:25 greve Exp $ > cwd /Users/iron/rito/VisualMeasures-CHOP/VisionMeasures-003 > cmdline mri_glmfit --y > /Applications/freesurfer5.1/subjects/VisionMeasures-003/dtrecon/dwi-ec.nii > --glmdir /Applications/freesurfer5.1/subjects/VisionMeasures-003/dtrecon > --dti > /Applications/freesurfer5.1/subjects/VisionMeasures-003/dtrecon/dwi-infodump.dat > sysname Darwin > hostname magi-2-balthasar.uphs.upenn.edu > machine x86_64 > user iron > FixVertexAreaFlag = 1 > UseMaskWithSmoothing 1 > OneSampleGroupMean 0 > y > /Applications/freesurfer5.1/subjects/VisionMeasures-003/dtrecon/dwi-ec.nii > logyflag 1 > X > /Applications/freesurfer5.1/subjects/VisionMeasures-003/dtrecon/dwi-infodump.dat > usedti 1 > glmdir /Applications/freesurfer5.1/subjects/VisionMeasures-003/dtrecon > IllCondOK 0 > ReScaleX 1 > DoFFx 0 > Creating output directory > /Applications/freesurfer5.1/subjects/VisionMeasures-003/dtrecon > Loading y from > /Applications/freesurfer5.1/subjects/VisionMeasures-003/dtrecon/dwi-ec.nii > Using DTI > bValue = 1000 > ERROR: cannot extract sWiPMemBlock.alFree[8] from > /Applications/freesurfer5.1/subjects/VisionMeasures-003/dtrecon/dwi-infodump.dat _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
