Hugh, Can you provide some examples of the problem with the terminal having issues detecting the FreeSurfer folder (ls pwd etc.)? And describe where the folder is installed on your computer in the Finder?
Thanks, D On Mon, Jul 14, 2014 at 12:54 PM, Hugh Pemberton <hughpembert...@gmail.com> wrote: > Another problem now is that my terminal is not recognising the freesurfer > folder.. it's just saying that the directory doesn't exist even though i can > see and interact with all the files through the finder.. any ideas what > might have happened/how I can check for the problem would be much > appreciated. > > Many thanks, > Hugh > > > On 14 July 2014 15:25, Hugh Pemberton <hughpembert...@gmail.com> wrote: >> >> i've tried reinstalling xquartz (this is on a mac by the way) and now I'm >> getting this error when trying to run tkmedit, any ideas would be hugely >> appreciated! >> >> Thanks, >> Hugh >> >> Couldn't create output file .xdebug_tkmeditGLUT: Fatal Error in >> tkmedit.bin: could not open display: >> /tmp/launch-ivIjwf/org.macosforge.xquartz:0 >> >> >> On 14 July 2014 09:41, Hugh Pemberton <hughpembert...@gmail.com> wrote: >>> >>> Hi everyone, I'm getting the follow error and it's jus started happening >>> after updating Xquartz.. any ideas what I can do? Also, i dont have a >>> .debug_tkmedit file, when tkmedit was running normally the first line would >>> say could not create debug file. >>> >>> Many thanks, >>> Hugh >>> >>> ERROR: A segfault has occurred. This is not your fault, >>> : but is most likely an unrecoverable error and has >>> : made the program unstable. >>> : >>> : Please send the contents of the file .xdebug_tkmedit >>> : that should be in this directory to freesurfer@nmr.mgh.harvard.edu >>> : >>> : Now exiting... >> >> > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
