Hi Lucette,
Are you saying that the label file saved by freeview can not be loaded
by other tools in freesurfer? Can you post the complete commands and
output that did not work?
Best,
Ruopeng
On 05/27/2014 02:03 AM, Lucette Cysique wrote:
Dear Ruopeng and colleagues,
I am interested in following same tracing protocol for the amygdala as
in "Neuroimage. 2012 April 2; 60(2): 1226–1235: "A reliable protocol
for the manual segmentation of the human amygdala and its subregions
using ultra-high resolution MRI”
I would like as they did use freeview because it has some versatility
and resolution that other programs do not have.
I have however one issue
Once I have created my ROI in freeview it ends up being by default a
.label file. I create my ROI using ROIs and edit ROI tools and simply
save it.
I have tried to use “mri_label2vol” to get my ROI file (e.g.,
right_amygdala.label) into a volume file from which I thought I could
then compute stats using “mri_segstats”
But it does not work, as it seems that the initial .label file does
not have the current format? Or required info? My command line output
that it cannot read my .label file
Thanks for your assistance
Lucette
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