In theory, it should be possible. I have not used Jorge's stream, so I don't know that much about it. Does it save an estimate of the FWHM? If so, then you can run mri_surfcluster passing it the p-value (ie, -log10(p)) map, the FWHM, the mask, and a voxel-wise threshold. This is what mri_glmfit-sim does, so you might check that script for mri_surfcluster command line options
doug On 3/22/14 11:03 PM, Pedro Rosa wrote: > Dear list, > I ran the recon-all and the Freesurfer 5.1 longitudinal pipeline in a > structural MRI dataset and I would like to use Monte Carlo as the method for > correction for multiple comparisons. However, the longitudinal LME tutorial > includes only FDR correction (lme_mass_FDR2). > Is it possible to use Monte Carlo correction for longitudinal data? Can I > input the outputs from MatLab (fstats = lme_mass_F(?h,CM): stats.F / pval / > sgn / df) into mri_glmfit and then run Monte Carlo? > If not, do you have any other suggestions of how I use Monte Carlo in > longitudinal analyses? > Thanks in advance, > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
