Hi Laura, please make sure to post to the list. Thanks! This is possible. Run mri_annotation2label to break the annotation up into labels, then use mris_label2annot to recombine only the ones you want back into an annotation doug
On 03/17/2014 03:55 PM, Laura Taylor wrote: > Sorry, I will try to explain better. > > I have used the average thickness (ThickAvg) stats from the > rh/lh.aparc.a2009s.stats file in my data analysis comparing cortical > thickness in different patient groups. > > For my results, I have say 10 areas from the rh/lh.aparc.a2009s.stats > that are thicker in one patient group than in another. I would like > to visually display these specific areas of cortex that are thicker in > one group than another on a whole/half brain. > > I can load the annotation file in freeview with all of the 74 regions > per hemisphere in different colors, but I'd like to make it so that my > 10 regions of interest are say red and the rest of the brain (64 other > regions) are, e.g. grey. > > Is this possible? > > Thank you, > > Laura > > > On Mon, Mar 17, 2014 at 12:24 PM, Douglas N Greve > <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> wrote: > > I'm not sure what you mean, can you elaborate? > doug > On 03/17/2014 03:02 PM, Laura Taylor wrote: > > Hi there, > > > > I am looking to somehow display a handful of cortical areas from the > > Destrieux atlas (aparc.a2009s). Is there a way to do this? > > > > Thanks, > > > > Laura > > > > > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> > Phone Number: 617-724-2358 <tel:617-724-2358> > Fax: 617-726-7422 <tel:617-726-7422> > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > Outgoing: > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to > whom it is > addressed. If you believe this e-mail was sent to you in error and > the e-mail > contains patient information, please contact the Partners > Compliance HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to > you in error > but does not contain patient information, please contact the > sender and properly > dispose of the e-mail. > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
