lh.thickness is not a surface file, it is a surface overlay. Try reading in lh.white as a surface doug
On 03/14/2014 10:34 AM, 조규호 wrote: > > Could anyone help me deal with error in integrating Freesurfer with > Surfstat ? > > Because "MNI object" data was not available not like as written in the > web documentation (http://www.math.mcgill.ca/keith/surfstat/), > <http://www.math.mcgill.ca/keith/surfstat/%29,> I used my own > patient's MRI data with Freesurfer software. > > (CIVET software is also inaccessible to me.) > > After Recon-all , I employed the files "lh.thickness and lh.pial "from > "surf" folder as input. (As written in "VIEWING DATA" Section in the > online document) > > I ran the command : > > SurfStatReadSurf('/Users/zhau/Dropbox/subj7442103/surf/lh.thickness') > > And the error : > > */Unable to read /Users/zhau/Dropbox/subj7442103/surf/lh.thickness, > magic = 16777215/* > > */Error in SurfStatReadSurf1 (line 20)/* > > */if nargin<2/* > > */ > /* > > */Output argument "surf" (and maybe others) not assigned during call to/* > > */"/Applications/MATLAB_R2013a.app/toolbox/surfstat/SurfStatReadSurf1.m>SurfStatReadSurf1"./* > > */ > /* > > */Error in SurfStatReadSurf (line 69)/* > > */[s,ab]=SurfStatReadSurf1(filenames{1,j},ab,numfields1);/* > > It seems I do not understand the structure of input file. > > How could I solve this? > > Thanks in advance. > > Kyoo Ho Cho > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
