are you puttting it in quotes? If so, don't doug On 03/13/2014 01:46 PM, Dusan Hirjak wrote: > Dear Doug, > > I typed 1.3 but it is still not working. > > Any other ideas??? > > Thanks for your help. > > DH > > > Date: Thu, 13 Mar 2014 12:20:57 -0400 > > From: gr...@nmr.mgh.harvard.edu > > To: freesurfer@nmr.mgh.harvard.edu > > Subject: Re: [Freesurfer] Extracting thickness, area and folding > values from Qdec > > > > Use 1.3 not 1,3 > > > > doug > > On 03/13/2014 10:12 AM, Dusan Hirjak wrote: > > > Dear Freesurfer Experts, > > > > > > I did a correlational analysis in qdec and found several significant > > > clusters after Monte-Carlo simulation (0.05). > > > Now, I would like to extract the mean cortical thickness, area and > > > folding values (peak maximum) of each study subject above the > > > significant cluster. > > > > > > I tried to run "mri_glmfit-sim --glmdir mc-z.neg.th13.pdf.dat --cache > > > "1,3" --sim-sign neg" > > > > > > However, I got the ERROR: thresh = 1.3 not completely converted > > > > > > What am I doing wrong? Any other ideas? > > > > > > Is the pdf.dat file the right one to use??? > > > > > > Thanks! > > > > > > DH > > > > > > > > > > > > _______________________________________________ > > > Freesurfer mailing list > > > Freesurfer@nmr.mgh.harvard.edu > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > -- > > Douglas N. Greve, Ph.D. > > MGH-NMR Center > > gr...@nmr.mgh.harvard.edu > > Phone Number: 617-724-2358 > > Fax: 617-726-7422 > > > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > The information in this e-mail is intended only for the person to > whom it is > > addressed. If you believe this e-mail was sent to you in error and > the e-mail > > contains patient information, please contact the Partners Compliance > HelpLine at > > http://www.partners.org/complianceline . If the e-mail was sent to > you in error > > but does not contain patient information, please contact the sender > and properly > > dispose of the e-mail. > >
-- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
