Hi doug and others,
Thanks doug.
For 1st question:I find that file. However not all has that file.May I generate
it manually?
Thanks doug.
All the best.
Rujing Zha
2014-02-22
charujing123
发件人：Douglas Greve <gr...@nmr.mgh.harvard.edu>
发送时间：2014-02-21 23:46
主题：Re: [Freesurfer] extracting mean thickness from specific cluster
收件人："freesurfer"<freesurfer@nmr.mgh.harvard.edu>
抄送：
On 2/21/14 10:04 AM, charujing123 wrote:
Hi all,
I finished the mri_glmfit-sim, and got some clusters in the cluster summary.
1,I want to know how to extract mean thickness for each subject in this
cluster?
There should already be a file there called something like something.y.ocn.dat.
This will have a row for each subject and a column for each cluster. The value
will be the mean for that subject inside that cluster.
2,If I want to extract mean thickness of each subject according to a
uncorrected p value, i.e. 0.005, what should I do to perform it?
What do you mean? Over all vertices that survive? Or for each all cluster
with a cluster-forming threshold of .005? If the latter, you can run
mri_glmfit-sim with --cwp 1 --cache 2.3 abs
Thanks.
All the best.
Rujing Zha
2014-02-21
charujing123
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