Hi again, When I convert a surface to .gii with mris_convert, it is shifted compared to the original surface when loaded into freeview (see previous mail). Does anyone know how to solve this?
Best, Karen On 02/18/2014 10:01 AM, Karen Marie Sandø Ambrosen wrote: > Hi Freesurfer experts, > > I am trying to run tracktography from freesurfer labels using > probtrackx2 in fsl. To convert the labels to surfaces I use the > label2surf command as recommended on the fslwiki. To use the label2surf > command I need to convert the surface, e.g. lh.white into a > fsl-compatible format using mris_convert: > > mris_convert lh.white lh.white.gii > > When I load lh.white and the created lh.white.gii into freeview the two > are not aligned. Aren't they suppose to be similar when lh.white.gii is > use in the label2surf command? Do I need additional arguments in the > mris_convert command? > > Best, > Karen > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
