Hi FS community, I was wondering if anyone had a chance to give this a look.
Thanks in advance, Panos > Hi FS community, > > I am doing a cortical thickness comparison between a diseased and a > healthy group. After running the mri_glmfit command for both hemispheres, > I project the uncorrected significance map and there are a number of > significant clusters showing (if you consider the p value to be at most > 0.05). However, instead of using the clusterwise Correction for Multiple > Comparisons, I wanted to use FDR to see what the results would look like, > and I had a few questions regarding the whole process: > > 1) Are Tksurfer and QDEC the only tools in FS that I can apply the FDR correction > with, or are there any other ways? > > 2) In Tksurfer, I tried using the "Set Threshold Using FDR" tool, and when > I set the rate from 0.88 to 0.87 it bumps up the minimum threshold from > 1.37 to 3.24 hence resulting in no significant clusters for rates less > than 0.88. Does that sound normal? > > Thanks in advance! > Panos > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
