As far as I can tell - and I may very well be using incorrect syntax - mris_calc needs volumes as inputs and does not accept labels. Does mris_calc accept label files as inputs, for instance in a command like: "mris_calc roi2.label and roi3.label"? If so, could someone point me at the correct syntax to use?
Thanks, -kami On 06/02/2014 15:40, "Maritza Ebling" <mari...@nmr.mgh.harvard.edu> wrote: >mris_calc should work for this purpose. Run mris_calc -h to see the >options > > >On Thu, 6 Feb 2014, Kami Koldewyn >wrote: > >> Hi All, >> >> I was thinking that there was a freesurfer tool that performed simple >>math operations on volumetric labels (similar to >> those that mris_label_calc performs for surface labels) but I can't >>seem to find one. Is there such a tool that I am >> simply missing? I am hoping to easily create non-overlapping labels >>from a set of currently overlapping labels. >> >> Thanks, >> >> >> -kami >> >> >> >> Rhif Elusen Gofrestredig 1141565 - Registered Charity No. 1141565 >> >> Gall y neges e-bost hon, ac unrhyw atodiadau a anfonwyd gyda hi, >>gynnwys deunydd cyfrinachol ac wedi eu bwriadu i'w >> defnyddio'n unig gan y sawl y cawsant eu cyfeirio ato (atynt). Os ydych >>wedi derbyn y neges e-bost hon trwy gamgymeriad, >> rhowch wybod i'r anfonwr ar unwaith a dilewch y neges. Os na fwriadwyd >>anfon y neges atoch chi, rhaid i chi beidio a >> defnyddio, cadw neu ddatgelu unrhyw wybodaeth a gynhwysir ynddi. Mae >>unrhyw farn neu safbwynt yn eiddo i'r sawl a'i >> hanfonodd yn unig ac nid yw o anghenraid yn cynrychioli barn Prifysgol >>Bangor. Nid yw Prifysgol Bangor yn gwarantu bod y >> neges e-bost hon neu unrhyw atodiadau yn rhydd rhag firysau neu 100% yn >>ddiogel. Oni bai fod hyn wedi ei ddatgan yn >> uniongyrchol yn nhestun yr e-bost, nid bwriad y neges e-bost hon yw >>ffurfio contract rhwymol - mae rhestr o lofnodwyr >> awdurdodedig ar gael o Swyddfa Cyllid Prifysgol Bangor. >> >> This email and any attachments may contain confidential material and is >>solely for the use of the intended recipient(s). >> If you have received this email in error, please notify the sender >>immediately and delete this email. If you are not the >> intended recipient(s), you must not use, retain or disclose any >>information contained in this email. Any views or >> opinions are solely those of the sender and do not necessarily >>represent those of Bangor University. Bangor University >> does not guarantee that this email or any attachments are free from >>viruses or 100% secure. Unless expressly stated in >> the body of the text of the email, this email is not intended to form a >>binding contract - a list of authorised >> signatories is available from the Bangor University Finance Office. >> >> >>_______________________________________________ >Freesurfer mailing list >Freesurfer@nmr.mgh.harvard.edu >https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer______________ >_________________________________ >Freesurfer mailing list >Freesurfer@nmr.mgh.harvard.edu >https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > >The information in this e-mail is intended only for the person to whom it >is >addressed. If you believe this e-mail was sent to you in error and the >e-mail >contains patient information, please contact the Partners Compliance >HelpLine at >http://www.partners.org/complianceline . If the e-mail was sent to you in >error >but does not contain patient information, please contact the sender and >properly >dispose of the e-mail. Rhif Elusen Gofrestredig 1141565 - Registered Charity No. 1141565 Gall y neges e-bost hon, ac unrhyw atodiadau a anfonwyd gyda hi, gynnwys deunydd cyfrinachol ac wedi eu bwriadu i'w defnyddio'n unig gan y sawl y cawsant eu cyfeirio ato (atynt). Os ydych wedi derbyn y neges e-bost hon trwy gamgymeriad, rhowch wybod i'r anfonwr ar unwaith a dilewch y neges. Os na fwriadwyd anfon y neges atoch chi, rhaid i chi beidio a defnyddio, cadw neu ddatgelu unrhyw wybodaeth a gynhwysir ynddi. Mae unrhyw farn neu safbwynt yn eiddo i'r sawl a'i hanfonodd yn unig ac nid yw o anghenraid yn cynrychioli barn Prifysgol Bangor. Nid yw Prifysgol Bangor yn gwarantu bod y neges e-bost hon neu unrhyw atodiadau yn rhydd rhag firysau neu 100% yn ddiogel. Oni bai fod hyn wedi ei ddatgan yn uniongyrchol yn nhestun yr e-bost, nid bwriad y neges e-bost hon yw ffurfio contract rhwymol - mae rhestr o lofnodwyr awdurdodedig ar gael o Swyddfa Cyllid Prifysgol Bangor. This email and any attachments may contain confidential material and is solely for the use of the intended recipient(s). If you have received this email in error, please notify the sender immediately and delete this email. If you are not the intended recipient(s), you must not use, retain or disclose any information contained in this email. Any views or opinions are solely those of the sender and do not necessarily represent those of Bangor University. Bangor University does not guarantee that this email or any attachments are free from viruses or 100% secure. Unless expressly stated in the body of the text of the email, this email is not intended to form a binding contract - a list of authorised signatories is available from the Bangor University Finance Office. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
