Hi Rotem, Check out the -dti flag in freeview, pass it a vector and FA volume. You can display the colormap as vectors as well once everything is loaded up.
Example command: freeview -dti V1.nii.gz FA.nii.gz -Louis On Mon, 27 Jan 2014, Rotem Saar wrote: > Hi, > > We followed the instructions on this link: > https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Diffusion#Masking > to perform diffusion analysis and wanted to ask if there is an option to view > the color-map in addition to the FA and ADC maps ? > We want to make sure that left-right tracts are red, anterior-posterior are > green ect... > is this possible ? > > Thanks > Rotem > Rotem Saar-Ashkenazy > Department of Brain and Cognitive Science > Ben Gurion University of the Negev > Beer-Sheva 84105 > Israel > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
