If you previously had XQuartz installed, then upgraded to Mavericks, it may have written over the relevant files. Please install Xquartz and give it another try. Thanks.
-Zeke On 01/24/2014 05:33 PM, Dusan Hirjak wrote: > Hi Zeke, > > sorry, I did it again and got the following output: > > /opt/x11/lib/libx11.dylib: > /usr/X11/lib/libX11.6.dylib (compatibility version 9.0.0, current > version 9.0.0) > /usr/X11/lib/libXau.6.dylib (compatibility version 7.0.0, current > version 7.0.0) > /usr/X11/lib/libXdmcp.6.dylib (compatibility version 7.0.0, current > version 7.0.0) > /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version > 125.2.11) > > > What should I do now. XQuartz is already installed. I did not have any > problems using Freesurfer until I installed Maverick:-) > > Thanks! > > DH > > > > Date: Fri, 24 Jan 2014 17:07:08 -0500 > > From: zkauf...@nmr.mgh.harvard.edu > > To: dusanhir...@hotmail.com; freesurfer@nmr.mgh.harvard.edu > > Subject: Re: [Freesurfer] Freesurfer, Matlab and Maverick > > > > Hello Dusan, > > > > Are you sure you typed the entire command? Because your system is > > supposed ouput information about that particular file. Instead you got > > the help information, which is output when you only type "otool" instead > > of ""otool -L /opt/X11/lib/libX11.dylib" > > > > Also, did you install XQuartz? > > > > -Zeke > > > > > > > > On 01/24/2014 04:35 PM, Dusan Hirjak wrote: > > > Hallo Zeke, > > > > > > I did it as you told me and typed "otool -L /opt/X11/lib/libX11.dylib" > > > in the command line, and got the following output: > > > > > > Usage: /Library/Developer/CommandLineTools/usr/bin/otool [-arch > > > arch_type] [-fahlLDtdorSTMRIHGvVcXmqQj] [-mcpu=arg] <object file> ... > > > -f print the fat headers > > > -a print the archive header > > > -h print the mach header > > > -l print the load commands > > > -L print shared libraries used > > > -D print shared library id name > > > -t print the text section (disassemble with -v) > > > -p <routine name> start dissassemble from routine name > > > -s <segname> <sectname> print contents of section > > > -d print the data section > > > -o print the Objective-C segment > > > -r print the relocation entries > > > -S print the table of contents of a library > > > -T print the table of contents of a dynamic shared library > > > -M print the module table of a dynamic shared library > > > -R print the reference table of a dynamic shared library > > > -I print the indirect symbol table > > > -H print the two-level hints table > > > -G print the data in code table > > > -v print verbosely (symbolically) when possible > > > -V print disassembled operands symbolically > > > -c print argument strings of a core file > > > -X print no leading addresses or headers > > > -m don't use archive(member) syntax > > > -B force Thumb disassembly (ARM objects only) > > > -q use llvm's disassembler (the default) > > > -Q use otool(1)'s disassembler > > > -mcpu=arg use `arg' as the cpu for disassembly > > > -j print opcode bytes (ARM64 objects only) > > > > > > > > > What should I do next to be able to use Freesurfer and Matlab on > Maverick??? > > > > > > Many thanks!!! > > > > > > DH > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > Date: Fri, 24 Jan 2014 11:35:17 -0500 > > > > From: zkauf...@nmr.mgh.harvard.edu > > > > To: dusanhir...@hotmail.com; freesurfer@nmr.mgh.harvard.edu > > > > Subject: Re: [Freesurfer] Freesurfer, Matlab and Maverick > > > > > > > > Hello Dusan, > > > > > > > > When you say you installed "X11 (2.7.5)" does that mean you've > installed > > > > the latest version of XQuartz > (http://xquartz.macosforge.org/landing/)? > > > > If not, please do that first. > > > > > > > > If you installed XQuartz, than can you please type the following > on the > > > > command line and provide me with the output: > > > > > > > > "otool -L /opt/X11/lib/libX11.dylib" > > > > > > > > -Zeke > > > > > > > > > > > > > > > > On 01/24/2014 11:02 AM, Dusan Hirjak wrote: > > > > > Dear experts, > > > > > > > > > > it seems that after the new apple update "Maverick" Matlab can > not get > > > > > access to Freesurfer. I already added the "recommended lines" > from the > > > > > homepage to matlab startup-file, but it is still not working. > Im trying > > > > > to estimate the local gyrification index. However when I type > > > "recon-all > > > > > -lgi -s G01" > > > > > Im getting the following message: > > > > > > > > > > *dyld: Library not loaded: /opt/X11/lib/libX11.6.dylib* > > > > > > > > > > * Referenced from: /Users/dhirjak/freesurfer/bin/qdec.bin* > > > > > > > > > > * Reason: Incompatible library version: qdec.bin requires version > > > > > 10.0.0 or later, but libX11.6.dylib provides version 9.0.0* > > > > > > > > > > *Trace/BPT trap* > > > > > > > > > > > > > > > What is the problem with X11 and its library version, I already > > > > > installed the latest version of X11 (2.7.5), but it is still not > > > working. > > > > > > > > > > > > > > > Can some help me??? > > > > > > > > > > > > > > > Many thanks!!! > > > > > > > > > > > > > > > DH > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > _______________________________________________ > > > > > Freesurfer mailing list > > > > > Freesurfer@nmr.mgh.harvard.edu > > > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > > > > > > > > > > > > The information in this e-mail is intended only for the person to > > > whom it is > > > > addressed. If you believe this e-mail was sent to you in error and > > > the e-mail > > > > contains patient information, please contact the Partners Compliance > > > HelpLine at > > > > http://www.partners.org/complianceline . If the e-mail was sent to > > > you in error > > > > but does not contain patient information, please contact the sender > > > and properly > > > > dispose of the e-mail. > > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
