Sophie, Try to add the line MEASURE1 = pial_lgi in the .Qdecrc in your home folder instead, that should make pial_lgi automatically listed in qdec.
Let me know if it doesn't work, Marie On Jan 13, 2014, at 8:11 AM, Douglas N Greve <gr...@nmr.mgh.harvard.edu<mailto:gr...@nmr.mgh.harvard.edu>> wrote: It has not been incorporated into QDEC. You will have to use mri_glmfit. doug On 01/13/2014 03:59 AM, Sophie Maingault wrote: Dear FS experts, I followed this page to measure LGI : http://freesurfer.net/fswiki/LGI I wanted to use it in QDEC, so after running recon-all –cache for pial_lgi, I created the $SUBJECTS_DIR/qdec/.Qdecrc with MEASURE1 = pial_lgi but I don't see it in the measures menu. Do you know why ? Best regards. Sophie Maingault _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu<mailto:gr...@nmr.mgh.harvard.edu> Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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