Hi Caspar, One thing you can do, if you have the label correspondences between your lables and the FS ones, is to use mri_binarize with the --replace option in your volumes.
--replace V1 V2 : replace voxels=V1 with V2 For label descriptions you can loook up $FREESURFER_HOME/FreeSurferColorLUT.txt. --Lilla On Mon, 6 Jan 2014, Caspar M. Schwiedrzik wrote: > Hi! > I have a volume in MNC format that contains labels, and I was wondering > whether there is a way to quickly convert them into Freesurfer labels? > Within the MNC file, voxels belonging to one label all have the same > intensity value, which is, however, not in RGB space but just a single > number, ranging from 1 to the number of labels. > Thanks, Caspar > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
