Hi Rashmi
putting them in the orig folder with those numbers will get recon-all to
do motion correction and averaging.
cheers
Bruce
On Thu, 12 Sep 2013, Rashmi Singh wrote:
Hello Freesurfer experts,
I am doing volumetrics study. During the scan we get 2-3 mprage per
scan for a subject.
While running the FreeSurfer, if I want to use the three mprages for
that subject as an input file, may I just keep the three mgz files
(001.mgz, 002 .mgz and 003.mgz) in the orig folder and run the simple recon
all command :=Recon-all -s (subject file name) -all or do I need to have
some additional l flags so that recon all command will use the three T1
images to get one output file?
Thanks,
Rashmi
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