try mri_glmfit-sim --glmdir GLM --no-sim perm.abs.2
doug On 06/05/2013 02:26 PM, Glen Lee wrote: > > > > > On Wed, Jun 5, 2013 at 12:12 PM, Douglas N Greve > <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> wrote: > > what was your original mri_glmfit-sim command? > > mri_glmfit-sim --glmdir GLM --sim perm 20000 2 perm.abs.2 > --sim-sign abs --overwrite > > > Then, I tried no-sim on the generated csd file with the following > command: > > mri_glmfit-sim --cwpvalthresh 0.99 --glmdir GLM --no-sim > --overwrite /csd/perm.abs.2.j001-osgm.csd > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
