Ok-will try Any idea how can I avoid steps like aligning to atlas when running specific steps of the streamline?
On Wed, May 8, 2013 at 4:24 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu>wrote: > oh, that's going to be tough. I guess you could extract the WM and use it > to create our wm.mgz and go from there > > On Wed, 8 May 2013, Shani Ben Amitay wrote: > > Segmentation into white matter gray matter and CSF of a rat brainCan you >> give me brief directions-where to >> >> start from? >> >> Thanks! >> >> Shani >> >> >> On Wed, May 8, 2013 at 3:46 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> >> wrote: >> Hi Shani >> >> what kind of segmentation? In general yes, but you'll need to mess >> with the recon-all script >> >> cheers >> Bruce >> On Wed, 8 May 2013, Shani Ben Amitay wrote: >> >> Hello Freesurfer >> I would like to extract the stream for surface-based analysis >> on the output of an >> in-house segmentation >> process.Is this possible?How? >> >> Thanks >> >> Shani >> >> >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/**complianceline<http://www.partners.org/complianceline>. >> If the e-mail was sent to you in error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> >> >> >>
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