Hi Nawaf - The first error occured much earlier in the log file. Your
gradient table file could not be found. Did you set the bvecfile variable
in your configuration file?
a.y
On Fri, 29 Mar 2013, Nawaf Yassi wrote:
Hi Anastasia
Thanks for your reply
Here is the file attached (I have replaced the subject's name with 'AAAAA'
for anonymity)
Regards
Nawaf
On 29/03/13 2:17 AM, "Anastasia Yendiki" <ayend...@nmr.mgh.harvard.edu>
wrote:
Hi Nawaf - Can you please send your trac-all.log? It's possible that the
problem started at an earlier step.
Thanks,
a.y
On Thu, 28 Mar 2013, Nawaf
Yassi wrote:
Dear mailing list
I am encountering an error at the
trac-all path stage of a tracula analysis (the
first two stages on trac-all
seem to have run ok) with the appropriate outputs. I am
getting the error
³Segmentation fault² (core dumped) very early on after the
dmri_paths
command is run (see below). Can anyone help?
I am using freesurfer 5.2
and FSL 5.0.2.1 (linux)
Regards
Nawaf
ATTACHED: ERROR MESSAGE + config
file below
=========================================================
[nyassi@bee1 scripts]$ trac-all -path -c dmrirc_single_subject
Too many
)'s.
INFO: SUBJECTS_DIR is
/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis/C01_freesurfer
INFO: Diffusion root is
/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis/C01_freesurfer
Actual FREESURFER_HOME /usr/local/freesurfer5.2
trac-paths
-c/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis/C01_freesurfer/C01
/scripts/
dmrirc.local
-log/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis/C01_freesurfer/C
01/scripts/
trac-all.log
-cmd/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis/C01_freesurfer/C
01/scripts/
trac-all.cmd
#-------------------------------------
/usr/local/freesurfer5.2/bin/trac-paths
#-------------------------------------
#@# Path reconstruction Thu Mar 28
10:01:34 EST 2013
rm
-rf/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis/C01_freesurfer/C0
1/dpath/lh
.cst_AS_avg33_mni_bbr
rm
-rf/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis/C01_freesurfer/C0
1/dpath/rh
.cst_AS_avg33_mni_bbr
rm
-rf/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis/C01_freesurfer/C0
1/dpath/lh
.ilf_AS_avg33_mni_bbr
rm
-rf/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis/C01_freesurfer/C0
1/dpath/rh
.ilf_AS_avg33_mni_bbr
rm
-rf/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis/C01_freesurfer/C0
1/dpath/lh
.unc_AS_avg33_mni_bbr
rm
-rf/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis/C01_freesurfer/C0
1/dpath/rh
.unc_AS_avg33_mni_bbr
rm
-rf/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis/C01_freesurfer/C0
1/dpath/fm
ajor_PP_avg33_mni_bbr
rm
-rf/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis/C01_freesurfer/C0
1/dpath/fm
inor_PP_avg33_mni_bbr
rm
-rf/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis/C01_freesurfer/C0
1/dpath/lh
.atr_PP_avg33_mni_bbr
rm
-rf/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis/C01_freesurfer/C0
1/dpath/rh
.atr_PP_avg33_mni_bbr
rm
-rf/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis/C01_freesurfer/C0
1/dpath/lh
.ccg_PP_avg33_mni_bbr
rm
-rf/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis/C01_freesurfer/C0
1/dpath/rh
.ccg_PP_avg33_mni_bbr
rm
-rf/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis/C01_freesurfer/C0
1/dpath/lh
.cab_PP_avg33_mni_bbr
rm
-rf/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis/C01_freesurfer/C0
1/dpath/rh
.cab_PP_avg33_mni_bbr
rm
-rf/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis/C01_freesurfer/C0
1/dpath/lh
.slfp_PP_avg33_mni_bbr
rm
-rf/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis/C01_freesurfer/C0
1/dpath/rh
.slfp_PP_avg33_mni_bbr
rm
-rf/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis/C01_freesurfer/C0
1/dpath/lh
.slft_PP_avg33_mni_bbr
rm
-rf/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis/C01_freesurfer/C0
1/dpath/rh
.slft_PP_avg33_mni_bbr
/usr/local/freesurfer5.2/bin/dmri_paths
--outdir/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis/C01_freesurf
er/C01/dpath/lh
.cst_AS_avg33_mni_bbr/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis
/C01_freesurfer/C01/dpath/rh
.cst_AS_avg33_mni_bbr/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis
/C01_freesurfer/C01/dpath/lh
.ilf_AS_avg33_mni_bbr/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis
/C01_freesurfer/C01/dpath/rh
.ilf_AS_avg33_mni_bbr/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis
/C01_freesurfer/C01/dpath/lh
.unc_AS_avg33_mni_bbr/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis
/C01_freesurfer/C01/dpath/rh
.unc_AS_avg33_mni_bbr/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis
/C01_freesurfer/C01/dpath/fm
ajor_PP_avg33_mni_bbr/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis
/C01_freesurfer/C01/dpath/fm
inor_PP_avg33_mni_bbr/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis
/C01_freesurfer/C01/dpath/lh
.atr_PP_avg33_mni_bbr/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis
/C01_freesurfer/C01/dpath/rh
.atr_PP_avg33_mni_bbr/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis
/C01_freesurfer/C01/dpath/lh
.ccg_PP_avg33_mni_bbr/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis
/C01_freesurfer/C01/dpath/rh
.ccg_PP_avg33_mni_bbr/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis
/C01_freesurfer/C01/dpath/lh
.cab_PP_avg33_mni_bbr/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis
/C01_freesurfer/C01/dpath/rh
.cab_PP_avg33_mni_bbr/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis
/C01_freesurfer/C01/dpath/lh
.slfp_PP_avg33_mni_bbr/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysi
s/C01_freesurfer/C01/dpath/rh
.slfp_PP_avg33_mni_bbr/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysi
s/C01_freesurfer/C01/dpath/lh
.slft_PP_avg33_mni_bbr/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysi
s/C01_freesurfer/C01/dpath/rh
.slft_PP_avg33_mni_bbr
--dwi/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis/C01_freesurfer/
C01/dmri/dwi
.nii.gz
--grad/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis/C01_freesurfer
/C01/dmri/bve
cs
--bval/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis/C01_freesurfer
/C01/dmri/bva
ls
--mask/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis/C01_freesurfer
/C01/dlabel/d
iff/lowb_brain_mask.nii.gz
--bpdir/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis/C01_freesurfe
r/C01/dmri.bed
postX --ntr 2 --fmin 0.05
--roi1/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis/C01_freesurfer
/C01/dlabel/m
ni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz/bilhome/nyassi/Imaging_Data/ANSWER-
Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/rh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz/bilhome/nyassi/Imaging_Data/ANSWER-
Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/lh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz/bilhome/nyassi/Imaging_Data/ANSWER-
Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/rh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz/bilhome/nyassi/Imaging_Data/ANSWER-
Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/lh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz/bilhome/nyassi/Imaging_Data/ANSWER-
Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/rh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz/bilhome/nyassi/Imaging_Data/ANSWER-
Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz/bilhome/nyassi/Imaging_Data/ANSWER-
Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/fminor_PP_avg33_mni_bbr_end1_dil.nii.gz/bilhome/nyassi/Imaging_Data/ANSWER-
Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/lh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz/bilhome/nyassi/Imaging_Data/ANSWER-
Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz/bilhome/nyassi/Imaging_Data/ANSWER-
Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/lh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz/bilhome/nyassi/Imaging_Data/ANSWER-
Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/rh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz/bilhome/nyassi/Imaging_Data/ANSWER-
Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/lh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz/bilhome/nyassi/Imaging_Data/ANSWER-
Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/rh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz/bilhome/nyassi/Imaging_Data/ANSWER-
Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/lh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz/bilhome/nyassi/Imaging_Data/ANSWER
-Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/rh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz/bilhome/nyassi/Imaging_Data/ANSWER
-Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/lh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz/bilhome/nyassi/Imaging_Data/ANSWER
-Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/rh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz
--roi2/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis/C01_freesurfer
/C01/dlabel/m
ni/lh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz/bilhome/nyassi/Imaging_Data/ANSWER-
Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/rh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz/bilhome/nyassi/Imaging_Data/ANSWER-
Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/lh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz/bilhome/nyassi/Imaging_Data/ANSWER-
Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/rh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz/bilhome/nyassi/Imaging_Data/ANSWER-
Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/lh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz/bilhome/nyassi/Imaging_Data/ANSWER-
Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/rh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz/bilhome/nyassi/Imaging_Data/ANSWER-
Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz/bilhome/nyassi/Imaging_Data/ANSWER-
Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/fminor_PP_avg33_mni_bbr_end2_dil.nii.gz/bilhome/nyassi/Imaging_Data/ANSWER-
Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/lh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz/bilhome/nyassi/Imaging_Data/ANSWER-
Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz/bilhome/nyassi/Imaging_Data/ANSWER-
Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/lh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz/bilhome/nyassi/Imaging_Data/ANSWER-
Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/rh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz/bilhome/nyassi/Imaging_Data/ANSWER-
Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/lh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz/bilhome/nyassi/Imaging_Data/ANSWER-
Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/rh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz/bilhome/nyassi/Imaging_Data/ANSWER-
Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/lh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz/bilhome/nyassi/Imaging_Data/ANSWER
-Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/rh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz/bilhome/nyassi/Imaging_Data/ANSWER
-Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/lh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz/bilhome/nyassi/Imaging_Data/ANSWER
-Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/rh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz
--reg/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis/C01_freesurfer/
C01/dmri/xfm
s/diff2mni.bbr.mat
--init/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis/C01_freesurfer
/C01/dlabel/d
iff/lh.cst_AS_avg33_mni_bbr_cpts_6.txt/bilhome/nyassi/Imaging_Data/ANSWER-Reco
very/C01/Analysis/C01_freesurfer/C01/dlabel/d
iff/rh.cst_AS_avg33_mni_bbr_cpts_6.txt/bilhome/nyassi/Imaging_Data/ANSWER-Reco
very/C01/Analysis/C01_freesurfer/C01/dlabel/d
iff/lh.ilf_AS_avg33_mni_bbr_cpts_5.txt/bilhome/nyassi/Imaging_Data/ANSWER-Reco
very/C01/Analysis/C01_freesurfer/C01/dlabel/d
iff/rh.ilf_AS_avg33_mni_bbr_cpts_5.txt/bilhome/nyassi/Imaging_Data/ANSWER-Reco
very/C01/Analysis/C01_freesurfer/C01/dlabel/d
iff/lh.unc_AS_avg33_mni_bbr_cpts_5.txt/bilhome/nyassi/Imaging_Data/ANSWER-Reco
very/C01/Analysis/C01_freesurfer/C01/dlabel/d
iff/rh.unc_AS_avg33_mni_bbr_cpts_5.txt/bilhome/nyassi/Imaging_Data/ANSWER-Reco
very/C01/Analysis/C01_freesurfer/C01/dlabel/d
iff/fmajor_PP_avg33_mni_bbr_cpts_7.txt/bilhome/nyassi/Imaging_Data/ANSWER-Reco
very/C01/Analysis/C01_freesurfer/C01/dlabel/d
iff/fminor_PP_avg33_mni_bbr_cpts_5.txt/bilhome/nyassi/Imaging_Data/ANSWER-Reco
very/C01/Analysis/C01_freesurfer/C01/dlabel/d
iff/lh.atr_PP_avg33_mni_bbr_cpts_5.txt/bilhome/nyassi/Imaging_Data/ANSWER-Reco
very/C01/Analysis/C01_freesurfer/C01/dlabel/d
iff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt/bilhome/nyassi/Imaging_Data/ANSWER-Reco
very/C01/Analysis/C01_freesurfer/C01/dlabel/d
iff/lh.ccg_PP_avg33_mni_bbr_cpts_5.txt/bilhome/nyassi/Imaging_Data/ANSWER-Reco
very/C01/Analysis/C01_freesurfer/C01/dlabel/d
iff/rh.ccg_PP_avg33_mni_bbr_cpts_5.txt/bilhome/nyassi/Imaging_Data/ANSWER-Reco
very/C01/Analysis/C01_freesurfer/C01/dlabel/d
iff/lh.cab_PP_avg33_mni_bbr_cpts_4.txt/bilhome/nyassi/Imaging_Data/ANSWER-Reco
very/C01/Analysis/C01_freesurfer/C01/dlabel/d
iff/rh.cab_PP_avg33_mni_bbr_cpts_4.txt/bilhome/nyassi/Imaging_Data/ANSWER-Reco
very/C01/Analysis/C01_freesurfer/C01/dlabel/d
iff/lh.slfp_PP_avg33_mni_bbr_cpts_5.txt/bilhome/nyassi/Imaging_Data/ANSWER-Rec
overy/C01/Analysis/C01_freesurfer/C01/dlabel/d
iff/rh.slfp_PP_avg33_mni_bbr_cpts_5.txt/bilhome/nyassi/Imaging_Data/ANSWER-Rec
overy/C01/Analysis/C01_freesurfer/C01/dlabel/d
iff/lh.slft_PP_avg33_mni_bbr_cpts_5.txt/bilhome/nyassi/Imaging_Data/ANSWER-Rec
overy/C01/Analysis/C01_freesurfer/C01/dlabel/d
iff/rh.slft_PP_avg33_mni_bbr_cpts_5.txt
--nprior/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis/C01_freesurf
er/C01/dlabel/m
ni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all/bilhome/nyassi/Imaging_Data/ANSWER-Re
covery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/lh.cst_AS_avg33_mni_bbr_fsnnids_all/bilhome/nyassi/Imaging_Data/ANSWER-Reco
very/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all/bilhome/nyassi/Imaging_Data/ANSWER-Re
covery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/rh.cst_AS_avg33_mni_bbr_fsnnids_all/bilhome/nyassi/Imaging_Data/ANSWER-Reco
very/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all/bilhome/nyassi/Imaging_Data/ANSWER-Re
covery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all/bilhome/nyassi/Imaging_Data/ANSWER-Reco
very/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all/bilhome/nyassi/Imaging_Data/ANSWER-Re
covery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all/bilhome/nyassi/Imaging_Data/ANSWER-Reco
very/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all/bilhome/nyassi/Imaging_Data/ANSWER-Re
covery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/lh.unc_AS_avg33_mni_bbr_fsnnids_all/bilhome/nyassi/Imaging_Data/ANSWER-Reco
very/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all/bilhome/nyassi/Imaging_Data/ANSWER-Re
covery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/rh.unc_AS_avg33_mni_bbr_fsnnids_all/bilhome/nyassi/Imaging_Data/ANSWER-Reco
very/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/fmajor_PP_avg33_mni_bbr_fsnnprior_all/bilhome/nyassi/Imaging_Data/ANSWER-Re
covery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/fmajor_PP_avg33_mni_bbr_fsnnids_all/bilhome/nyassi/Imaging_Data/ANSWER-Reco
very/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/fminor_PP_avg33_mni_bbr_fsnnprior_all/bilhome/nyassi/Imaging_Data/ANSWER-Re
covery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/fminor_PP_avg33_mni_bbr_fsnnids_all/bilhome/nyassi/Imaging_Data/ANSWER-Reco
very/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all/bilhome/nyassi/Imaging_Data/ANSWER-Re
covery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/lh.atr_PP_avg33_mni_bbr_fsnnids_all/bilhome/nyassi/Imaging_Data/ANSWER-Reco
very/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all/bilhome/nyassi/Imaging_Data/ANSWER-Re
covery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/rh.atr_PP_avg33_mni_bbr_fsnnids_all/bilhome/nyassi/Imaging_Data/ANSWER-Reco
very/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all/bilhome/nyassi/Imaging_Data/ANSWER-Re
covery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all/bilhome/nyassi/Imaging_Data/ANSWER-Reco
very/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all/bilhome/nyassi/Imaging_Data/ANSWER-Re
covery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all/bilhome/nyassi/Imaging_Data/ANSWER-Reco
very/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all/bilhome/nyassi/Imaging_Data/ANSWER-Re
covery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/lh.cab_PP_avg33_mni_bbr_fsnnids_all/bilhome/nyassi/Imaging_Data/ANSWER-Reco
very/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all/bilhome/nyassi/Imaging_Data/ANSWER-Re
covery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/rh.cab_PP_avg33_mni_bbr_fsnnids_all/bilhome/nyassi/Imaging_Data/ANSWER-Reco
very/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all/bilhome/nyassi/Imaging_Data/ANSWER-R
ecovery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all/bilhome/nyassi/Imaging_Data/ANSWER-Rec
overy/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all/bilhome/nyassi/Imaging_Data/ANSWER-R
ecovery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all/bilhome/nyassi/Imaging_Data/ANSWER-Rec
overy/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all/bilhome/nyassi/Imaging_Data/ANSWER-R
ecovery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/lh.slft_PP_avg33_mni_bbr_fsnnids_all/bilhome/nyassi/Imaging_Data/ANSWER-Rec
overy/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all/bilhome/nyassi/Imaging_Data/ANSWER-R
ecovery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/rh.slft_PP_avg33_mni_bbr_fsnnids_all
--lprior/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis/C01_freesurf
er/C01/dlabel/m
ni/lh.cst_AS_avg33_mni_bbr_fsprior_all/bilhome/nyassi/Imaging_Data/ANSWER-Reco
very/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/lh.cst_AS_avg33_mni_bbr_fsids_all/bilhome/nyassi/Imaging_Data/ANSWER-Recove
ry/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/rh.cst_AS_avg33_mni_bbr_fsprior_all/bilhome/nyassi/Imaging_Data/ANSWER-Reco
very/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/rh.cst_AS_avg33_mni_bbr_fsids_all/bilhome/nyassi/Imaging_Data/ANSWER-Recove
ry/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/lh.ilf_AS_avg33_mni_bbr_fsprior_all/bilhome/nyassi/Imaging_Data/ANSWER-Reco
very/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/lh.ilf_AS_avg33_mni_bbr_fsids_all/bilhome/nyassi/Imaging_Data/ANSWER-Recove
ry/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/rh.ilf_AS_avg33_mni_bbr_fsprior_all/bilhome/nyassi/Imaging_Data/ANSWER-Reco
very/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/rh.ilf_AS_avg33_mni_bbr_fsids_all/bilhome/nyassi/Imaging_Data/ANSWER-Recove
ry/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/lh.unc_AS_avg33_mni_bbr_fsprior_all/bilhome/nyassi/Imaging_Data/ANSWER-Reco
very/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/lh.unc_AS_avg33_mni_bbr_fsids_all/bilhome/nyassi/Imaging_Data/ANSWER-Recove
ry/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/rh.unc_AS_avg33_mni_bbr_fsprior_all/bilhome/nyassi/Imaging_Data/ANSWER-Reco
very/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/rh.unc_AS_avg33_mni_bbr_fsids_all/bilhome/nyassi/Imaging_Data/ANSWER-Recove
ry/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/fmajor_PP_avg33_mni_bbr_fsprior_all/bilhome/nyassi/Imaging_Data/ANSWER-Reco
very/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/fmajor_PP_avg33_mni_bbr_fsids_all/bilhome/nyassi/Imaging_Data/ANSWER-Recove
ry/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/fminor_PP_avg33_mni_bbr_fsprior_all/bilhome/nyassi/Imaging_Data/ANSWER-Reco
very/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/fminor_PP_avg33_mni_bbr_fsids_all/bilhome/nyassi/Imaging_Data/ANSWER-Recove
ry/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/lh.atr_PP_avg33_mni_bbr_fsprior_all/bilhome/nyassi/Imaging_Data/ANSWER-Reco
very/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/lh.atr_PP_avg33_mni_bbr_fsids_all/bilhome/nyassi/Imaging_Data/ANSWER-Recove
ry/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/rh.atr_PP_avg33_mni_bbr_fsprior_all/bilhome/nyassi/Imaging_Data/ANSWER-Reco
very/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/rh.atr_PP_avg33_mni_bbr_fsids_all/bilhome/nyassi/Imaging_Data/ANSWER-Recove
ry/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/lh.ccg_PP_avg33_mni_bbr_fsprior_all/bilhome/nyassi/Imaging_Data/ANSWER-Reco
very/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/lh.ccg_PP_avg33_mni_bbr_fsids_all/bilhome/nyassi/Imaging_Data/ANSWER-Recove
ry/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/rh.ccg_PP_avg33_mni_bbr_fsprior_all/bilhome/nyassi/Imaging_Data/ANSWER-Reco
very/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/rh.ccg_PP_avg33_mni_bbr_fsids_all/bilhome/nyassi/Imaging_Data/ANSWER-Recove
ry/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/lh.cab_PP_avg33_mni_bbr_fsprior_all/bilhome/nyassi/Imaging_Data/ANSWER-Reco
very/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/lh.cab_PP_avg33_mni_bbr_fsids_all/bilhome/nyassi/Imaging_Data/ANSWER-Recove
ry/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/rh.cab_PP_avg33_mni_bbr_fsprior_all/bilhome/nyassi/Imaging_Data/ANSWER-Reco
very/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/rh.cab_PP_avg33_mni_bbr_fsids_all/bilhome/nyassi/Imaging_Data/ANSWER-Recove
ry/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/lh.slfp_PP_avg33_mni_bbr_fsprior_all/bilhome/nyassi/Imaging_Data/ANSWER-Rec
overy/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/lh.slfp_PP_avg33_mni_bbr_fsids_all/bilhome/nyassi/Imaging_Data/ANSWER-Recov
ery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/rh.slfp_PP_avg33_mni_bbr_fsprior_all/bilhome/nyassi/Imaging_Data/ANSWER-Rec
overy/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/rh.slfp_PP_avg33_mni_bbr_fsids_all/bilhome/nyassi/Imaging_Data/ANSWER-Recov
ery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/lh.slft_PP_avg33_mni_bbr_fsprior_all/bilhome/nyassi/Imaging_Data/ANSWER-Rec
overy/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/lh.slft_PP_avg33_mni_bbr_fsids_all/bilhome/nyassi/Imaging_Data/ANSWER-Recov
ery/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/rh.slft_PP_avg33_mni_bbr_fsprior_all/bilhome/nyassi/Imaging_Data/ANSWER-Rec
overy/C01/Analysis/C01_freesurfer/C01/dlabel/m
ni/rh.slft_PP_avg33_mni_bbr_fsids_all
--seg/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis/C01_freesurfer/
C01/dlabel/m
ni/aparc+aseg.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5
--sdp/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis/C01_freesurfer/
C01/dlabel/d
iff/lh.cst_AS_avg33_mni_bbr_cpts_6_std.txt/bilhome/nyassi/Imaging_Data/ANSWER-
Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/d
iff/rh.cst_AS_avg33_mni_bbr_cpts_6_std.txt/bilhome/nyassi/Imaging_Data/ANSWER-
Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/d
iff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt/bilhome/nyassi/Imaging_Data/ANSWER-
Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/d
iff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt/bilhome/nyassi/Imaging_Data/ANSWER-
Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/d
iff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt/bilhome/nyassi/Imaging_Data/ANSWER-
Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/d
iff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt/bilhome/nyassi/Imaging_Data/ANSWER-
Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/d
iff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt/bilhome/nyassi/Imaging_Data/ANSWER-
Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/d
iff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt/bilhome/nyassi/Imaging_Data/ANSWER-
Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/d
iff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt/bilhome/nyassi/Imaging_Data/ANSWER-
Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/d
iff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt/bilhome/nyassi/Imaging_Data/ANSWER-
Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/d
iff/lh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt/bilhome/nyassi/Imaging_Data/ANSWER-
Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/d
iff/rh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt/bilhome/nyassi/Imaging_Data/ANSWER-
Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/d
iff/lh.cab_PP_avg33_mni_bbr_cpts_4_std.txt/bilhome/nyassi/Imaging_Data/ANSWER-
Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/d
iff/rh.cab_PP_avg33_mni_bbr_cpts_4_std.txt/bilhome/nyassi/Imaging_Data/ANSWER-
Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/d
iff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt/bilhome/nyassi/Imaging_Data/ANSWER
-Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/d
iff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt/bilhome/nyassi/Imaging_Data/ANSWER
-Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/d
iff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt/bilhome/nyassi/Imaging_Data/ANSWER
-Recovery/C01/Analysis/C01_freesurfer/C01/dlabel/d
iff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt
Segmentation fault (core
dumped)
foreach: No match.
==============================================================================
=======
================================================
[nyassi@bee1
scripts]$ cat dmrirc_single_subject
#
# dmrirc.example
#
# This file
contains commands that will be run by trac-all before an analysis.
# It is
used to set all parameters needed for the analysis.
#
# Remove a parameter
from your dmrirc file if you want use the default value.
# Parameters that
don't have default values must be specified.
#
# Any other commands that
you might want to run before an analysis can be added
# to this file.
#
# Original Author: Anastasia Yendiki
# CVS Revision Info:
# $Author:
ayendiki $
# $Date: 2013/02/16 22:49:06 $
# $Revision: 1.3.2.4 $
#
# Copyright © 2011 The General Hospital Corporation (Boston, MA) "MGH"
#
# Terms and conditions for use, reproduction, distribution and
contribution
# are found in the 'FreeSurfer Software License Agreement'
contained
# in the file 'LICENSE' found in the FreeSurfer distribution, and
here:
#
#
https://surfer.nmr.mgh.harvard.edu/fswiki/FreeSurferSoftwareLicense
#
#
Reporting: freesurfer@nmr.mgh.harvard.edu
#
#
# FreeSurfer
SUBJECTS_DIR
# T1 images and FreeSurfer segmentations are expected to be
found here
#
setenv SUBJECTS_DIR
/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/Analysis/C01_freesurfer/>
# Output directory where trac-all results will be saved
# Default: Same as
SUBJECTS_DIR
#
# Subject IDs
#
set subjlist = (C01)
# In case
you want to analyze only Huey and Louie
# Default: Run analysis on all
subjects
#
# Input diffusion DICOMs (file names relative to dcmroot)
# If original DICOMs don't exist, these can be in other image format
# but
then bvecfile, bvalfile, and nb0 must be specified (see below)
#
set
dcmroot =
/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/DICOMS/raw_dti/HURLE_LISA
set dcmlist = (IM-0001-0001.dcm)
# Diffusion gradient table
# Must be
specified if inputs are not MGH DICOMs
# Three-column format, one row for
each volume in the diffusion data set
# Default: Read from DICOM header
#
# set bvecfile =
/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/bvecs.txt
# Diffusion
b-value table
# Must be specified if inputs are not MGH DICOMs
#
Single-column format, one value for each volume in the diffusion data set> #
Default: Read from DICOM header
#
# set bvalfile =
/bilhome/nyassi/Imaging_Data/ANSWER-Recovery/C01/bvals.txt
# Number of
low-b images
# Must be specified if inputs are not DICOM
# Default: Read
from DICOM header
#
set nb0 = 0
# Perform registration-based
B0-inhomogeneity compensation?
# Default: 0 (no)
#
# set dob0 = 1
#
Input B0 field map magnitude DICOMs (file names relative to dcmroot)
# Only
used if dob0 = 1
# Default: None
#
# set b0mlist = (huey/fmag/XXX-1.dcm
dewey/fmag/XXX-1.dcm louie/fmag/XXX-1.dcm)
# Input B0 field map phase
DICOMs (file names relative to dcmroot)
# Only used if dob0 = 1
# Default:
None
#
# set b0plist = (huey/fphas/XXX-1.dcm dewey/fphas/XXX-1.dcm
louie/fphas/XXX-1.dcm)
# Echo spacing for field mapping sequence (from
sequence printout)
# Only used if dob0 = 1
# Default: None
#
# set
echospacing = 0.7
# Perform registration-based eddy-current
compensation?
# Default: 1 (yes)
#
set doeddy = 1
# Rotate
diffusion gradient vectors to match eddy-current compensation?
# Only used
if doeddy = 1
# Default: 1 (yes)
#
set dorotbvecs = 1
# Fractional
intensity threshold for BET mask extraction from low-b images
# This mask is
used only if usemaskanat = 0
# Default: 0.3
#
set thrbet = 0.3
#
Perform diffusion-to-T1 registration by flirt?
# Default: 0 (no)
#
set
doregflt = 0
# Perform diffusion-to-T1 registration by bbregister?
#
Default: 1 (yes)
#
set doregbbr = 1
# Perform registration of T1 to
MNI template?
# Default: 1 (yes)
#
set doregmni = 1
# MNI
template
# Only used if doregmni = 1
# Default:
$FSLDIR/data/standard/MNI152_T1_1mm_brain.nii.gz
#
# set mnitemp =
/path/to/mni_template.nii.gz
# Perform registration of T1 to CVS
template?
# Default: 0 (no)
#
set doregcvs = 0
# CVS template
subject ID
# Only used if doregcvs = 1
# Default: cvs_avg35
#
# set
cvstemp = donald
# Parent directory of the CVS template subject
# Only
used if doregcvs = 1
# Default: $FREESURFER_HOME/subjects
#
# set
cvstempdir = /path/to/cvs/atlases/of/ducks
# Use brain mask extracted
from T1 image instead of low-b diffusion image?
# Has no effect if there is
no T1 data
# Default: 1 (yes)
#
set usemaskanat = 1
# Paths to
reconstruct
# Default: All paths in the atlas
#
# set pathlist = (
lh.cst_AS rh.cst_AS \
lh.unc_AS rh.unc_AS \
lh.ilf_AS rh.ilf_AS \
fmajor_PP fminor_PP
\
lh.atr_PP rh.atr_PP \
lh.ccg_PP
rh.ccg_PP \
lh.cab_PP rh.cab_PP \
lh.slfp_PP rh.slfp_PP \
lh.slft_PP
rh.slft_PP )
# Number of path control points
# It can be a single
number for all paths or a different number for each of the
# paths specified
in pathlist
# Default: 7 for the forceps major, 6 for the corticospinal
tract,
# 4 for the angular bundle, and 5 for all other paths
#
# set ncpts = (6 6 5 5 5 5 7 5 5 5 5 5 4 4 5 5 5 5)
# List of training
subjects
# This text file lists the locations of training subject
directories
# Default: $FREESURFER_HOME/trctrain/trainlist.txt
#
# set
trainfile = $FREESURFER_HOME/trctrain/trainlist.txt
# Number of "sticks"
(anisotropic diffusion compartments) in the bedpostx
# ball-and-stick
model
# Default: 2
#
set nstick = 2
# Number of MCMC burn-in
iterations
# (Path samples drawn initially by MCMC algorithm and
discarded)
# Default: 200
#
# set nburnin = 200
# Number of MCMC
iterations
# (Path samples drawn by MCMC algorithm and used to estimate path
distribution)
# Default: 5000
#
# set nsample = 7500
# Frequency
with which MCMC path samples are retained for path distribution
# Default: 5
(keep every 5th sample)
#
# set nkeep = 5
# Reinitialize path
reconstruction?
# This is an option of last resort, to be used only if one
of the reconstructed
# pathway distributions looks like a single curve. This
is a sign that the
# initial guess for the pathway was problematic, perhaps
due to poor alignment
# between the individual and the atlas. Setting the
reinit parameter to 1 and
# rerunning "trac-all -prior" and "trac-all
-path", only for the specific
# subjects and pathways that had this problem,
will attempt to reconstruct them
# with a different initial guess.
#
Default: 0 (do not reinitialize)
#
# set reinit = 0
The
information in this e-mail is intended only for the person to whom it
is
addressed. If you believe this e-mail was sent to you in error and the
e-mail
contains patient information, please contact the Partners Compliance
HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to
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_______________________________________________
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Freesurfer@nmr.mgh.harvard.edu
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The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
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