Catherine, Thats odd, can you email me your qdec.table.dat file? qdec parses 'discretes' if they're non-numerical, so maybe there is a stray character thats messing it up.
Nick > Sorry, just to clarify; it lists age as a discreet variable rather > than continuous for some reason, not the other way round as I > accidentally wrote=) > > Regards > > > Quoting Catherine Bois <c.b...@sms.ed.ac.uk> on Tue, 12 Feb 2013 > 14:58:45 +0000: > >> >> Dear all, >> >> I have a question; >> >> I am trying to load data into qdec; the data table is loaded fine >> (although it lists age as continuous for some region, rather than >> discreet). However, When i try to generate the stats table, this >> error comes up. Does this mean I somehow have to manually set the >> subjects directory to where my subjects are (rather than the default >> that seems to be used), using the "generate stats table" option? If >> so, how is this done? Or is it a preprocessing step I have missed out? >> >> mkdir: cannot create directory >> `/usr/local2/freesurfer510/subjects/qdec': Permission denied >> ERROR: In >> /usr/pubsw/packages/KWWidgets/CVS-vtk560/KWWidgets/vtkKWTkUtilities.cxx, >> line 230 >> vtkKWQdecApp (0x30732c58): >> Script: >> vtkTemp2 GenerateStatsDataTables >> Returned Error on line 1: >> Uncaught exception: command failed: mkdir -p >> /usr/local2/freesurfer510/subjects/qdec/stats_tables/ >> >> Stack trace: >> Uncaught exception: command failed: mkdir -p >> /usr/local2/freesurfer510/subjects/qdec/stats_tables/ >> >> while executing >> "vtkTemp2 GenerateStatsDataTables" >> >> Grateful for your help >> >> Regards Catherine >> >> >> >> -- >> The University of Edinburgh is a charitable body, registered in >> Scotland, with registration number SC005336. >> >> >> >> ----- End forwarded message ----- >> >> >> -- >> The University of Edinburgh is a charitable body, registered in >> Scotland, with registration number SC005336. >> >> > > > > -- > The University of Edinburgh is a charitable body, registered in > Scotland, with registration number SC005336. > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
