Hi Antonella, Just run recon-all with the flag "-hippo-subfields" but without the flag "-all" (otherwise you'll be rerunning a lot of stuff you do not need to rerun): DO: recon-all -s bert -hippo-subfields DON'T DO: recon-all -s bert -all -hippo-subfields Kind regards, /Eugenio
On Mon, 2012-12-03 at 08:39 -0800, Antonella Kis wrote: > Dear FS team, > > > I would like to know if there is any options to get the > hippocampal subfield segmentation so I can get the volume for each > segmentation if I > > was running only recon-all for all my subjects or I need to re-run recon-all > but with a > hippocampal subfield segmentation option this time? > > > Many thanks, > Antonella > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- ------------------------------------------------------------------------------------- Juan Eugenio Iglesias, PhD http://www.jeiglesias.com igles...@nmr.mgh.harvard.edu Athinoula A. Martinos Center for Biomedical Imaging Department of Radiology, MGH, Harvard Medical School 149 Thirteenth Street, Suite 2301 Charlestown, Massachusetts 2129 U.S.A. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
