Hi Darshan
sounds like something pretty big is wrong. If you upload the dataset we'll
take a look
Bruce
On Tue, 9 Oct 2012, Darshan P wrote:
I have one MRI and I run freesurfer on it . It runs through completely .
When I see the output though , the surface does not include a huge part of
the temporal lobe.
I looked at the brain mask, and the deskulling is perfect. But the wm.mgz
does not include temporal regions and hence the surface drops off much
before it reaches the temporal lobe. This also affects the pial surface.
I tried to manually add some voxels in the wm.mgz without success. I read
some slides which talk about changing the brainmask, but as I said before
the brain mask is perfect.
Not sure what else I can do ?
Regards
DP
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