That's my best guess. Good luck Bruce
On Aug 28, 2012, at 11:07 PM, Hugh Pemberton <hughpembert...@gmail.com> wrote: > Yeah had 4/5 other processes going together, shall I just sort memory and > re-do? Thanks for such a speedy response! > Hugh > > On 29 Aug 2012, at 12:35, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > >> Looks like the careg died, probably because you ran out of memory. Was >> anything else running on the machine? >> >> >> >> On Aug 28, 2012, at 10:17 PM, Hugh Pemberton <hughpembert...@gmail.com> >> wrote: >> >>> Hi Freesurfers, >>> >>> Have had this error come up after recon-all for a number of subjects and >>> was wondering if you know what the issue is..? I have attached the >>> recon-all.log too FYI. >>> >>> INFO: assuming .mgz format >>> $Id: mris_fix_topology.c,v 1.48 2011/03/02 00:04:32 nicks Exp $ >>> $Id: mrisurf.c,v 1.693.2.2 2011/04/27 19:21:05 nicks Exp $ >>> MRISread(/home/hughp/freesurfer/subjects/FAC/surf/lh.qsphere.nofix): could >>> not open file >>> reading input surface >>> /home/hughp/freesurfer/subjects/FAC/surf/lh.qsphere.nofix... >>> No such file or directory >>> mris_fix_topology: could not read input surface >>> /home/hughp/freesurfer/subjects/FAC/surf/lh.qsphere.nofix >>> No such file or directory >>> >>> As the error suggests cannot read lh.qsphere, there is indeed nothing at >>> all in the surf folder. >>> Thanks for all your help, >>> Hugh >>> <recon-all.error> >>> <recon-all.log> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> >> The information in this e-mail is intended only for the person to whom it is >> addressed. If you believe this e-mail was sent to you in error and the e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
