Do those files exist? Do they have content in them? doug On 05/15/2012 05:51 PM, Rashmi Singh wrote: > Hello, > I am trying to get the asegmentation information after the recon-all > run in the table form, but I am continuously getting the following error > > asegstats2table --subjects AA262.G1 AA267.G2 AA304.G1 --meas volume > --tablefile asegstats.txt > SUBJECTS_DIR : /opt/freesurfer/subjects > Parsing the .stats files > ERROR: The stats file > /opt/freesurfer/subjects/AA262.G1/stats/aseg.stats is not found or is > too small to be a valid statsfile > Use --skip flag to automatically skip bad stats files > > I did try to use the skip option , but then , it skips all the files > giving the same error. > When I individually open the aseg files from the stats folder, those > look fine to me. > > Please advise. > > Rashmi. > > > ------------------------------------------------------------------------ > > This document may contain information covered under the Privacy Act, 5 > USC 552(a), and/or the Health Insurance Portability and Accountability > Act (PL 104-191) and its various implementing regulations and must be > protected in accordance with those provisions. Healthcare information > is personal and sensitive and must be treated accordingly. If this > correspondence contains healthcare information it is being provided to > you after appropriate authorization from the patient or under > circumstances that don't require patient authorization. You, the > recipient, are obligated to maintain it in a safe, secure and > confidential manner. Redisclosure without additional patient consent > or as permitted by law is prohibited. Unauthorized redisclosure or > failure to maintain confidentiality subjects you to application of > appropriate sanction. If you have received this correspondence in > error, please notify the sender at once and destroy any copies you > have made. > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
