I have seen this message and I'm currently trying to use your script "srf2obj" to convert to obj format some surfaces created by FS, firstly i did convert the aseg into a volume in the native space using "mri_convert", after that, i'd transform the aseg volume into a surface mgh format (mri_vol2surf), then store the surface as ascii by using "mri_convert" then I'm using your script to convert that surface to an object file but always renturns the following error:
--
aplication srf2obj
gawk: /root/trabajo/freesurfer/bin/srf2obj:2:
' inválido en la expresiónrfer/bin/srf2obj:2: ^ caracter '
I'm working under centOS 4.3
Best Regards,
Gabriel
El 22/02/12, Anderson Winkler <andersonwink...@hotmail.com> escribió:
Hi Darshan,
If you'd like to go directly from FreeSurfer .asc to OBJ, the attached little script should do the trick...
Hope it helps!
All the best,
Anderson
On 21/02/12 16:59, Pedro Paulo de Magalhães Oliveira Junior wrote:There's a how-to in the FreeSurfer website: http://surfer.nmr.mgh.harvard.edu/fswiki/HowTo/HowTo
Pedro Paulo Jr._______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
On Mon, Feb 20, 2012 at 23:32, Manfred G Kitzbichler <manfr...@nmr.mgh.harvard.edu <manfr...@nmr.mgh.harvard.edu>> wrote:
Hi Darshan,
as Bruce suggested, you can use mris_convert to get an STL file which you can import into Blender or MeshLab. Both write Wavefront OBJ files.
- Manfred
On 02/20/2012 07:24 PM, Darshan P wrote:Hello all,
I was wondering if I can convert the surface outputs to an OBJ mesh file format .Since most of the applications are in windows I was hoping if there is conversion tool to do this .
RegardsDarshan
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--
Manfred G. Kitzbichler, Research Fellow
Harvard Medical School & Mass General Hospital
Martinos Center for Biomedical Imaging
149 Thirteenth Street, Rm 10.018
Charlestown, MA 02129, USA
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--------------------------
PhD. student Gabriel González-Escamilla
Laboratory of Functional Neuroscience
Department of Physiology, Anatomy, and Cell Biology
University Pablo de Olavide
Ctra. de Utrera, Km.1
41013 - Seville
- Spain -
Email: ggon...@upo.es
http://www.upo.es/neuroaging/es/
PhD. student Gabriel González-Escamilla
Laboratory of Functional Neuroscience
Department of Physiology, Anatomy, and Cell Biology
University Pablo de Olavide
Ctra. de Utrera, Km.1
41013 - Seville
- Spain -
Email: ggon...@upo.es
http://www.upo.es/neuroaging/es/
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