Sonya, it looks like subject 1005 is missing its aseg.stat file for some reason. confirm that it completed its recon correctly, then run:
recon-all -s 1005 -segstats which will create the stats files. then qdec should run properly. it should not be necessary to use the -skip flag (thats use only for very unusual cases of mixed parcellations). n. On Wed, 2012-04-04 at 13:21 -0500, sonya kaur wrote: > Hi Nick, > Here's the error that I'm getting: > asegstats2table --meas volume > --tablefile /mnt/haley/Sonya/qdec/stats_tables/aseg.volume.stats.dat > --subjects 1001 1002 1003 1004 1005 1006 1009 1010 1012 1013 1014 1015 > 1016 1017 1018 1020 1022 1023 1024 1025 1028 1029 1030 1031 1033 1034 > 1036 1037 1038 1039 1042 1045 1048 1050 1052 1054 1055 1056 1057 1058 > 1059 1061 1063 1066 1067 1070 1071 1072 1073 1074 1076 1079 1080 1082 > 1089 1098 1099 1100 1102 1103 1104 1106 1107 1108 1113 1115 1120 1121 > 1123 1124 1125 1127 1128 1129 1132 1133 1135 1136 1137 1138 1140 1144 > 1146 1147 1148 1151 > Building the table.. > SUBJECTS_DIR : /mnt/haley/Sonya > ERROR: cannot find /mnt/haley/Sonya/1005/stats/aseg.stats > Use --skip flag if you want to continue in such cases > > > [nsilab-07:/mnt/haley/Sonya] sk27829% ERROR: > In /usr/pubsw/packages/KWWidgets/CVS/src/KWWidgets/vtkKWTkUtilities.cxx, line > 230 > vtkKWQdecApp (0x6918ef0): > Script: > vtkTemp3 GenerateStatsDataTables > Returned Error on line 1: > Uncaught exception: command failed: asegstats2table --meas volume > --tablefile /mnt/haley/Sonya/qdec/stats_tables/aseg.volume.stats.dat > --subjects 1001 1002 1003 1004 1005 1006 1009 1010 1012 1013 1014 1015 > 1016 1017 1018 1020 1022 1023 1024 1025 1028 1029 1030 1031 1033 1034 > 1036 1037 1038 1039 1042 1045 1048 1050 1052 1054 1055 1056 1057 1058 > 1059 1061 1063 1066 1067 1070 1071 1072 1073 1074 1076 1079 1080 1082 > 1089 1098 1099 1100 1102 1103 1104 1106 1107 1108 1113 1115 1120 1121 > 1123 1124 1125 1127 1128 1129 1132 1133 1135 1136 1137 1138 1140 1144 > 1146 1147 1148 1151 > > > Sonya > > On Tue, Mar 27, 2012 at 11:26 PM, sonya kaur <sonya.kau...@gmail.com> > wrote: > Hi everyone, > I realize I'm quickly becoming an annoyance, but I'm having > trouble loading my data file into qdec. I keep getting the > error: QdecDataTable::Load failed to tokenize string: on line > 88 of HTN_FMRI_Qdec. HTN_FMRI_Qdec is the name of my data > file. I do not even have a line 88 as I have only 86 subjects > and 4 variables. > > > Thank you! > Sonya > -- > Sonya Kaur > > > Clinical Psychology Graduate Student > Department of Psychology > The University of Texas, Austin > 1 University Station, A8000 > Austin, TX 78712 > SEA 4.110E > > sonya_k...@mail.utexas.edu > > > > > > > > -- > Sonya Kaur > > > Clinical Psychology Graduate Student > Department of Psychology > The University of Texas, Austin > 1 University Station, A8000 > Austin, TX 78712 > SEA 4.110E > > sonya_k...@mail.utexas.edu > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
