Hi Christophe Doug is out of town for a week. Can you repost next week and he'll answer then?
Bruce On Mon, 19 Mar 2012, Christopher Bell wrote: > > I have run a bunch of cases through bbregister and overall it worked great! > 315 out of about 325 cases > the alignments were very good, but on 10 subjects it did very poorly. I can > not so far find anything unusual > about this data. Per earlier posts, I have tried the different initilization > options with no luck. I also tried an > fsl_rigid_register 6 DOF to create a starting .dat ,but that was way off > too, maybe because it > uses similar initilization information? I also saw the post to use > --init-reg-out to save the init transform > but I am not sure what to make of the output. > > This is aligning data that has been through the 1000FC pre-processing. This > converts our RAS > scans to RPI, and also de-obliques using AFNI. Would you suspect either of > these steps as > confusing bbregister? We are using dcm2nii (mricron) for dicom to nifti > conversion. > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
