After being able to build with GCC, I tried to add OpenMP support: [root@login002 freesurfer-dev-20120106]# ./configure --enable-openmp -disable- all-apps --with-mni-dir=/export/minc-1.4/ --with-vxl-dir=/export/vxl-1.13.0 --prefix=/scratch/mtobias/freesurfer-dev-gcc-openmp ... (Note: Mac OS X doesn't use crypt) checking for nccreate in -lnetcdf... no configure: error: FATAL: netcdf lib not found. Set LDFLAGS or --with-mni-dir.
I don't believe there's a problem with the library: [root@login002 freesurfer-dev-20120106]# ls /export/minc-1.4/lib libEBTKS.a libminc.a libnetcdf.a libvolume_io.la perl5 libEBTKS.la libminc.la libvolume_io.a mni_autoreg [root@login002 freesurfer-dev-20120106]# nm /export/minc-1.4/lib/libnetcdf.a | grep nccreate 000000000000028d T nccreate and if I eliminate the "--enable-openmp" flag it configures fine. Depending on how well FreeSurfer is parallelized, OpenMP could be a great benefit for us here, but if it doesn't work too well, or isn't really supported, I can move on to try other things. Cheers, Malcolm -- Malcolm Tobias 314.362.1594 _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
