Hi, The QAtools scripts are in the process of being updated and debugged. You would need to make a new file order file based on one of the subjects in your data set. See help for the flag to do this. The default file order file included with the scripts was generated from data which had been processed in FS 4.5 I believe. The order of certain steps in the recon stream have changed since that release. Will you be using QA tools for anything else besides checking all of your files exist and were created in the right order? -Louis
On Fri, 12 Aug 2011, Knut J Bjuland wrote: > Hi > > I have looked at QAtools at > > https://surfer.nmr.mgh.harvard.edu/fswiki/QATools. > > But there seem to be some trouble. I have fixed up the wrong file issue > but there is problem with my files being in the wrong order. Should I > try to reorder the files to reflect the new situation or is there > something wrong with my processing of recon-all. > > Knut J > > > > > > mri/transforms/talairach.xfm mri/rawavg.mgz > mri/rawavg.mgz mri/orig.mgz > mri/orig.mgz mri/nu.mgz > mri/transforms/talairach.auto.xfm mri/transforms/talairach.auto.xfm > mri/nu.mgz mri/transforms/talairach.xfm > .......... ......... > .......... ......... > .......... ......... > 14 outputfiles_NOTOK > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
