Hi Vanessa, it looks like the error must have occurred earlier in the process as the input to mri_cc can't be read. Can you send the whole recon-all.log?
cheers Bruce On Thu, 16 Jun 2011, Vanessa Lim wrote: > Hi, > > > > does anyone know what to do here please? I can see it in file manager. > > > > mri_cc -aseg aseg.auto_noCCseg.mgz -o aseg.auto.mgz CG > will read input aseg from aseg.auto_noCCseg.mgz > writing aseg with cc labels to aseg.auto.mgz > reading aseg from > /home/virtualuser/Desktop/freeSurfer/CG/CG/mri/aseg.auto_noCCseg.mgz > mghRead(/home/virtualuser/Desktop/freeSurfer/CG/CG/mri/aseg.auto_noCCseg.mgz, > -1): could not open file > mri_cc: could not read aseg volume from > /home/virtualuser/Desktop/freeSurfer/CG/CG/mri/aseg.auto_noCCseg.mgz > > also assuming I fix this error how do I resume from this point (or another > point) the rest of recon-all autorecon2? > > Thanks, > > Vanessa > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
