Not happening anymore, thanks! > Hi Chinduri, is this still happening? I can't replicate. > > doug > > Chindhuri Selvadurai wrote: >> Hi all, >> >> We are trying to run individual analyses on several subjects, and we >> keep >> getting a 'Segmentation Fault.' We have run other subjects with the >> same >> command a while ago, and the command worked fine at that time. Do you >> have any idea what would be causing this error? The output is included >> below: >> >> Command: selxavg3-sess -analysis mandyrh3 -fwhm -s PBMCT15 >> Subjects Dir: /cluster/manoach/milton/subjects >> FreeSurfer v. Stable 5 >> >> >> Session: /autofs/cluster/manoach/milton/subjects/PBMCT15 >> ---------------- >> Fri May 13 12:21:58 EDT 2011 >> Run: 012 ---------------- >> Fri May 13 12:21:58 EDT 2011 >> Update not needed >> Fri May 13 12:21:58 EDT 2011 >> register-sess completed >> PBMCT15 MC ----------------------------- >> mc-sess -fstem f -fmcstem fmcpr -s PBMCT15 -d >> /autofs/cluster/manoach/milton/subjects -fsd bold -rlf task -per-run >> -nolog -update >> Logfile is /dev/null >> ------------------------------------------- >> /autofs/cluster/manoach/milton/subjects/PBMCT15 >> RunList: 012 >> ------- ************************** ----------- >> ------- Motion Correcting Run 012 ----------- >> ------- ************************** ----------- >> sess = PBMCT15 >> Fri May 13 12:21:58 EDT 2011 >> mc-afni2 --i 012/f.nii --t 012/template.nii --o 012/fmcpr.nii.gz --mcdat >> 012/fmcpr.mcdat >> /autofs/cluster/manoach/milton/subjects/PBMCT15/bold >> mri_info --nframes --o /tmp/mriinfo.3377 012/template.nii >> log file is 012/fmcpr.nii.gz.mclog >> mcdat file is 012/fmcpr.mcdat >> tmp dir is 012/tmp.mc-afni2.3377 >> #@# -------------------------------- >> /autofs/cluster/manoach/milton/subjects/PBMCT15/bold >> mri_convert 012/template.nii 012/tmp.mc-afni2.3377/tempvol.nii.gz >> --nskip >> 0 --ndrop 0 -odt float >> mri_convert 012/template.nii 012/tmp.mc-afni2.3377/tempvol.nii.gz >> --nskip >> 0 --ndrop 0 -odt float >> nskip = 0 >> ndrop = 0 >> $Id: mri_convert.c,v 1.179.2.1 2011/03/22 16:37:02 nicks Exp $ >> reading from 012/template.nii... >> TR=3000.00, TE=0.00, TI=0.00, flip angle=0.00 >> i_ras = (-0.998297, -0.0395807, 0.0428535) >> j_ras = (0.0411249, -0.998513, 0.0357732) >> k_ras = (0.0413739, 0.0374746, 0.998441) >> changing data type from short to float (noscale = 0)... >> writing to 012/tmp.mc-afni2.3377/tempvol.nii.gz... >> #@# -------------------------------- >> /autofs/cluster/manoach/milton/subjects/PBMCT15/bold >> mri_convert 012/f.nii 012/tmp.mc-afni2.3377/invol.nii.gz -odt float >> mri_convert 012/f.nii 012/tmp.mc-afni2.3377/invol.nii.gz -odt float >> Segmentation fault >> >> >> Thanks! >> >> Best, >> >> Chindhuri Selvadurai >> >> Psychiatric Neuroimaging, Manoach Lab >> Martinos Center for Biomedical Imaging, MGH >> Phone: (617)726-0307 >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html > > >
Best, Chindhuri Selvadurai Psychiatric Neuroimaging, Manoach Lab Martinos Center for Biomedical Imaging, MGH Phone: (617)726-0307 _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
