We are having an issue with scripts we used in freesurfer 4.5.0 but no longer work in 5.0.0. It is the mc-sess step, and we receive:
ERROR: Flag -toff unrecognized. -sf sf -df df -fsd bold -rlf ./tmp_run_list -toff 0 Done... On the wiki, that flag is still recognized. When we delete it, we then receive a "by run" or "by session" error. I suspect this has something to do with the freesurfer or AFNI update, but we do not know what the new mc-sess takes as tags since the wiki has not changed. Does anybody know how mc-sess has changed? Thank you, Luis L.S. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
