Hi Brendan, do you really need the full simulation? If you can use the mc-z, then we have a new version of the simulation script that will run in a few minutes using pre-cached simulation tables. You can use this as long as you use a threshold that is either 1.3, 2.0, 2.3, 3.0, 3.3, or 4. This will be standard with version 5. Until we have version 5 is ready, you can download and install the new simulation script and cached tables with:
cd $FREESURFER_HOME/bin mv mri_glmfit-sim mri_glmfit-sim.backup Get new version from here ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_glmfit-sim cd $FREESURFER_HOME/average Get this tar file ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mult-comp-cor.tar.gz tar xvfz mult-comp-cor.tar.gz See mri_glmfit-sess --help for more info. doug Brendan Robert Ansell wrote: > Dear FreeSurfer users, > > I have attempted to run mc-full for 20 iterations on 18 cores to test the > time per iteration. The process is taking more than 14 hours. > > It times out at Poll 4725 job 1 > > How long does each iteration take for mc-full? > > We have 8 hemispheres to run, which will total 80,000 iterations. > > How many CPUs are required to run mc-full (threshold: 2, iterations: > 10000) in a reasonable time period, say 2 weeks? > > Any information on the steps involved in the completion of the polling > process and subsequent steps would be appreciated. > > Thanks in advance, > > Brendan Ansell > > MNC, Melbourne University > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
