Thanks Nick, This does seem to work.
best wishes, Narly. On Tue, 20 Oct 2009, Nick Schmansky wrote: > Narly, > > v3.0 uses the aparc.a2005s atlas. > > to use the a2002s atlas in v3.0, edit the recon-all script and replace > instances of '2005' with '2002', which only appear in the cortparc2 > stage. i havent tried this, so i dont know if the atlas will work > though. > > Nick > > > On Tue, 2009-10-20 at 18:03 +0100, Narly A Golestani wrote: > > Hello all, > > > > Thanks Chistophe for your answers. > > > > I have not heard back regading some of the other points. > > > > I would like to know: > > > > 1) The fs release in which ?h.aparc.a2005s.annot replaced > > ?h.aparc.a2002s.annot. I assume it was before 2007 (I used version 3.0.5 > > in 2007). > > > > 2a) *** If it is possible to use the 2002 Destrieux atlas with > > either the present or with older (say version 3.0.5) versions of > > freesurfer? **** > > > > Christophe seems to think that there was an important change in > > the reconstruction process in 2005 that obliged you to relabel the > > subjects used in the database. > > > > 2b) If this is possible, how can I go about it? I guess somewhere in the > > recon-all -all command I will need to specificy to use the 2002 and not > > the default atlas for that version (ie; the a2005 atlas for version > > 3.0.5). > > > > 3) Rahul: how does the Desikan parcellation define the transverse > > temporal gyrus (ie; does it include multiple transverse gyri or only the > > most anterior one in the case of duplication)? And has this definition > > changed between freesurfer versions 3.0.5 and 4.4? I have looked at the > > Desikan 2006 Neuroimage paper (desikan06-parcellation.pdf) but it does not > > specify exactly how the posterior boundary of the transverse gyrus was > > defined. > > > > > > thanks in advance, > > best wishes, > > Narly. > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > ==================================== Narly Golestani Institute of Cognitive Neuroscience 17 Queen Square London WC1N 3AR United Kingdom Tel: +44 (0)20 7679 7529 ==================================== _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
