Hi Ryan, is this only in the longitudinal stream? Sounds like a bug. If you upload the whole subject directory we'll take a look.
Bruce On Thu, 10 Sep 2009 muet0...@umn.edu wrote: > Hello, > > I am running the longitudinal processing using version 4.5 and was > wondering if there are any data quality checks specific to the longitudinal > stream (other than the standard ones listed for the cross-sectional > analysis)? For example, is there a way to check the registration between > TP1 & TP2 when creating the base? > > > Also, in two of my 36 subjects (one in creating the base, one TP->base > longitudinal processing), the final step that creates wmparc.mgz was > taking extremely long to finish (I let it go 18hrs before killing the > process, and only 25 slices were complete). After looking at the > aparc+aseg.mgz file, I noticed that part of the right hemi, and all > voxels outside of the brain received a value of 41, corresponding to right > cerebral white matter. The aseg.mgz appears to be fine, and the pial & > inflated + annotation file appeared OK in tksurfer. Any ideas on what may > be going wrong with these cases? > > Thanks! > -Ryan > > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
