Hi FreeSurfer,
I am trying to run Glm for a group comparison analysis
I ran the mris_prepoc and mri_surf2surf and it completed without
error. However, when I run mri_glmfit it gives me the following error:
gdfReadHeader: reading comp_groups.fsgd
INFO: ignoring tag Variable
ERROR: gdfReadV1: Input line 1, subjid = Cont_FreeSurf_BMAMDCONTROL20
Found 1 variables, expected. 0
FSGDF Format Error: file = comp_groups.fsgd, tag=Input
The "comp_groups.fsgd" file was constructed in line with the FreeSurfer rules...
For instance,
GroupDescriptorFile 1
Title Lista_Controles_y_Pacientes
Class Home_Control
Class Home_SC
Class Dona_Control
Class Dona_SC
Variable Age
Input Cont_FreeSurf_BMAMDCONTROL20 Home_Control 27
Input Cont_FreeSurf_BMAMGCONTROL27 Dona_Control 38
Input Cont_FreeSurf_BMAMMCONTROL43 Home_SC 46
Input Cont_FreeSurf_BMAMMCONTROL5 Dona_SC 28
...
Is there any problem with this format?
The data corresponding to each subject is locate inside the
$SUBJECTS_DIR directory (i.e.,
$SUBJECTS_DIR/Cont_FreeSurf_BMAMDCONTROL20)
Regards,
Erick
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