Jamie, The script would contains lines like this:
set SUBJECTS=(subj1 subj2 subj3 subj4) set ONE_SUBJECT=(subj3) When rebuilding the atlas of 40 subjects on our cluster, where each subject gets its own node, it takes about 2 days. so on a single machine, about 80 days. Nick On Wed, 2009-04-08 at 16:32 -0500, Jamie Hanson wrote: > > so that it just runs the command locally. note that this script submits > > multiple subjects to multiple nodes, so if you have 30 subjects, and you > > dont use a cluster, it will take much much much longer to complete. > > Hi Nick- > > I am working on that script right now. One quick question about this, > is there an example of the subjects.csh file (to specify files for > training?). I understand I need to set for ONE_SUBJECT variable, but I > wasn't sure how the other SUBJECTS should be specified (and couldn't > find any other examples on-line or in my version of freesurfer). > > RE: computation load / time... It sounds like 2 days w/ multiple > nodes... We don't do any job queue / cluster batching system, so for a > single machine, what is a rough ball-park for completion time? > > Thanks much! > jamie. > > > > > > Nick > > > > > > On Tue, 2009-04-07 at 12:16 -0500, Jamie Hanson wrote: > >> Hi Freesufer folks- > >> > >> I was just about to start constructing a custom aseg atlas and I > >> wondered if there were any recommendations for any of the optional > >> flags? Any parameters yield better results (especially for specific > >> brain regions)? I was focused on improving amygdala segmentation for > >> my structural images (hence my asking). > >> > >> Best, > >> jamie. > >> > >> > >> > >> > > > > > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
