Hi Doug. Yup, the FDR button is working for me in tkmedit. I see the mask to brain, but as you can probably guess I'm interested in masking to the basal ganglia.
DD From: Doug Greve [mailto:[EMAIL PROTECTED] Sent: Tuesday, December 02, 2008 12:04 PM To: Dan Dillon Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Possible to constrain FDR to a label in the volume? Yea, there's not a mask to label. There is a mask to brain, but I'm not sure if you can substitute your own mask for it. I just tried to run it, and could not get FDR to work at all in tkmedit. Is it working for you at all? doug Dan Dillon wrote: Dear FreeSurfers, I've created a basal ganglia label and am wondering if it's possible to constrain the FDR calculation to that label? Based on earlier messages it seems like tksurfer has a "marked label only" option for FDR, but I haven't been able to find something similar in tkmedit. Any help greatly appreciated. Thanks! Dan Dillon, Ph.D. Post-doctoral Fellow Affective Neuroscience Lab Dept. of Psychology, Harvard University Phone: (617) 495-1889 E-mail: [EMAIL PROTECTED] _____ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center [EMAIL PROTECTED] Phone Number: 617-724-2358 Fax: 617-726-7422 In order to help us help you, please follow the steps in: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
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