Hi, using version 4.0.5.
i used mri_extract_label on the aparc+aseg.mgz file to extract and convert labels into volume nifti files, which i can view and use outside FreeSurfer. works fine. however, i have manually edited some surface labels, following the instructions found here: https://surfer.nmr.mgh.harvard.edu/fswiki/tksurfer_labeledit?action=fullsearch&context=180&value=mris_annot_to_segmentation&titlesearch=Titles these instructions result in a modified .annot file, which i have. my question: what is the best way to get a nifti volume for the modified (manually edited) label? ideally, this nifti volume should be exactly the same as done with mri_extract_label except for the modified part. thanks, -joost
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