Hi, Two things:
1) Try running mris_volmask from the command line and see if it runs. You may be missing a library (I recall having a similar error).
2) Running out of memory might be a factor. How much do you have? Padraig Cameron Ellis wrote:
Hi, I am receiving this error for every subject I send through recon-all. I am checking for edits that need to be made but it seems very odd that 30 subjects or so would all error out at the same step. Any suggestions? Cameron Subject 'Ponce_033d2': make all recon-all -s /autofs/space/grouch_004/users/ponce/Ponce_033d2 -hemi lh -cortribbon INFO: SUBJECTS_DIR is /autofs/space/grouch_004/users/ponce Actual FREESURFER_HOME /autofs/space/freesurfer/centos4.0_x86_64/stable4 -rw-rw-r-- 1 cameo zenuwgp 1257898 Jan 29 17:38 /autofs/space/grouch_004/users/ponce/Ponce_033d2/scripts/recon-all.log Linux node0325 2.6.9-42.0.3.ELsmp #1 SMP Fri Oct 6 06:28:26 CDT 2006 x86_64 x86_64 x86_64 GNU/Linux #-------------------------------------------- [EMAIL PROTECTED] Cortical ribbon mask Wed Jan 30 11:41:19 EST 2008 /autofs/space/grouch_004/users/ponce/Ponce_033d2/mri mris_volmask --label_left_white 2 --label_left_ribbon 3 --label_right_white 41 --label_right_ribbon 42 --save_ribbon --save_distance Ponce_033d2 Segmentation fault Linux node0325 2.6.9-42.0.3.ELsmp #1 SMP Fri Oct 6 06:28:26 CDT 2006 x86_64 x86_64 x86_64 GNU/Linux recon-all exited with ERRORS at Wed Jan 30 11:41:42 EST 2008 _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Pádraig Kitterick Graduate Student Department of Psychology University of York Heslington York YO10 5DD UK Tel: +44 (0) 1904 43 3170 Email: [EMAIL PROTECTED] _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
