Hi Nick, This is what I wrote (FS 4.0.1): mris_anatomical_stats -log logfile -l ?h.cortex.label subjid ?h NB: the logfile is created but is empty.
Thanks, Antonio >-----Original Message----- >From: Nick Schmansky [mailto:[EMAIL PROTECTED] >Sent: Tuesday, December 18, 2007 3:10 PM >To: Gallo, Antonio (NIH/NINDS) [F] >Cc: Freesurfer Mailing List >Subject: Re: [Freesurfer] mris_anatomical_stats > >Antonio, > >Can you send me a command-line that shows usage of creation of the log >file? That is, where it should be created, but isnt. > >In v3.0.5, the last three measures that you mention are wrong, and this >problem was fixed in v4.0.0. > >Does the v4.0 mris_anatomical_stats always produce results for the pial >surface? I think that was broken in the v3.0.5 version as well. > >Nick > > >On Tue, 2007-12-18 at 11:02 -0500, Gallo, Antonio (NIH/NINDS) [F] wrote: >> Hi All, >> >> Could you please help with the following: >> >> >> >> When we run mris_anatomical_stats with FS 4.0.1 we can see the results >> on the terminal and we are able to get a log file, but this latter >> appears always blank. >> >> Countrarywise, when we use mris_anatomical_stats with FS 3.0.5 on the >> same set of data we are able to get a log file with the outputs but we >> have noticed these two things: >> >> 1) results are not identical to the ones coming from >> mris_anatomical_stats with FS 4.0.1; in particular, we see minimal >> differences when looking at the average cortical thickness and major >> differences when looking at the three last measures (i.e. average >> integrated rectified mean curvature, average integrated rectified >> Gaussian curvature, folding index); >> >> 2) the results reported in the in the log file for the total >> surface area always the ones coming from the pial surface whatever >> surface name we specified (pial or white) >> >> >> >> Thanks in advance for your help, >> >> >> >> Antonio >> >> >> >> >> >> Antonio Gallo, MD >> >> NIB-NINDS-NIH >> >> 10 Center Drive >> >> Building 10, Room 5C203B >> >> Bethesda, MD, 20892 - USA >> >> ph #: 001-301-496.7368 >> >> fax #: 001-301-402.0373 >> >> *********************** >> >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
