Tommi, Do you have a machine on which this script can run without the glibc error? I have been able to recreate the error you see in a debugger on inv, but can't figure out what is going wrong. (Doug, the glibc error occurs when fclose is called on line 565 of mriFunctionalDataAccess.c). Doug or I will need to look into this further.
Nick On Wed, 2007-09-05 at 19:02 -0400, [EMAIL PROTECTED] wrote: > Hi guys, > > On machine inv (more or less the same error on machine ai) > nmr-dev-env (same error on nmr-std-env) > > cd /space/cuzco/2/users/raij/avml_fmri_mctogether/ > > setenv SUBJECTS_DIR /space/cognito/5/users/raij/subjects_mri/ > setenv SUBJECT fsaverage > > tksurfer fsaverage lh inflated -overlay > avml07_session_BRISI08/bold/group_ISIXTR_BERT_ERFIRsm5pf5tpefsub_18cat/sphsm10/h-lh.bhdr > -timecourse > avml07_session_BRISI08/bold/group_ISIXTR_BERT_ERFIRsm5pf5tpefsub_18cat/sphsm10/h-lh.bhdr > > > Output: > > surfer: current subjects dir: /space/cognito/5/users/raij/subjects_mri/ > surfer: not in "scripts" dir ==> using cwd for session root > surfer: session root data dir ($session) set to: > surfer: /autofs/space/cuzco_002/users/raij/avml_fmri_mctogether > surfer: Reading header info from > /space/cognito/5/users/raij/subjects_mri//fsaverage/mri/T1.mgz > reading group avg surface area 822 cm^2 from file > surfer: vertices=163842, faces=327680 > INFO: bvolumeRead: min = 0, max = 0 > *** glibc detected *** corrupted double-linked list: 0x00000000060b7db0 *** > Abort > > Oddly enough, on machine ai, if I leave out the -timecourse part of the > command line, the FreeSurfer window opens with the correct overlay and I > can scroll through conditions and time points. Further, if I then manually > load the timecourse from File/Load Time Course... menu, this works giving > the time course display just as it should > > Even more oddly, on machine inv (which is spanking new and has lots of RAM > etc) even the above basic command line with only loading the overlay gives > the above glibc error. > > I have 8 subjects * 66 labels = timecourses of 528 labels to extract, > which makes this clearly a script job - the only practical solution would > be to find a way to make the command line work. > > Suggestions? For example, could it be that this has something to do with > nvidia drivers? > > Thanks, > > Tommi > > --- > Tommi Raij, M.D., Ph.D. > MGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging > Bldg 149, 13th St > Charlestown, MA 02129 > U.S.A. > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
