Hi Don,

Nick actually just recently included something to allow you to pass the control points to mri_ca_normalize, so it can help the subcortical segmentation. Nick: what is the new flag?

cheers,
Bruce

On Wed, 11 Jul 2007, Don Hagler wrote:

In recon-all, it says you are supposed to use -autorecon2-cp if you use control points. So I wonder why earlier normalization steps also use control points, such as Norm1 and CANormalize. What effect do the control points have in those steps?

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